v-a-s-a

bayesian_sir

Covid SIR modeling with bayesian parameter estimation.

beagle_imputation

Pipeline for running imputation on Beagle.

cges_qc

Split from consensus caller repo. This is a set of QC procedures used in validating consensus caller performace.

fuma_snp2gene_upload

Upload files to FUMA's snp2gene service from the command line.

galaxy.consensus

consensus calling tool for cox Galaxy instance.

gene_search

A search bar experiment.

google-gotcloud

Testing variant calling with Google Cloud

hierarchical_qc

A simple hierarchical model of expected SNP counts across genotyping platforms.

ricopili_bioinformatics

Test bed for extending Ricopili with external bioinformatics tooling.

toy_bbvi

Black Box Variational Inference in Julia

v-a-s-a/galaxy.consensus

consensus calling tool for cox Galaxy instance.

v-a-s-a/beagle_imputation

Pipeline for running imputation on Beagle.

v-a-s-a/cges_qc

Split from consensus caller repo. This is a set of QC procedures used in validating consensus caller performace.

v-a-s-a/google-gotcloud

Testing variant calling with Google Cloud

v-a-s-a/ricopili_bioinformatics

Test bed for extending Ricopili with external bioinformatics tooling.

v-a-s-a/amino_acids

v-a-s-a/frequency_replacement

Replacing frequencies from a DANER file given a set of reference frequencies.

v-a-s-a/galaxy_tools

Miscellaneous tools created and wrapped for use with galaxy

v-a-s-a/gcloud_1000g_streaming

Experimental recalling from the Sequence Read Archive using instances on google cloud

v-a-s-a/gcloud_sequencing_pipelines

A small experiment running an alignment pipeline using the google compute engine

v-a-s-a/orcid_author_list

Generate a formatted author list from a set of ORCIDs.

v-a-s-a/pgrn-seq