vahidAK/NanoMethPhase

Issues

• Utilizing phased BAM and phased VCF files generated by Pepper-Margin-DeepVariant as inputs

  #27 opened 3 months ago by edeuse
  4

• Modkit compatibility

  #26 opened 6 months ago by weishwu
  4

• I need to filter whatshap phased vcf before running NanoMethPhase?

  #25 opened 6 months ago by weishwu
  1

• hydroxymethylation results not right

  #24 opened 6 months ago by weishwu
  3

• Could modbam2bed output files be used as input methylation call files?

  #23 opened 6 months ago by CWYuan08
  1

• Installing NanoMethPhase

  #22 opened 9 months ago by olaraym
  2

• About modification caller

  #18 opened a year ago by weishwu
  11

• Getting haplotype methylome

  #19 opened a year ago by BeatrizFaustino
  7

• About the results in dma

  #21 opened a year ago by isnmn
  5

• bam2bis的结果bam文件可以直接使用bismark去运行吗

  #20 opened a year ago by lanyunxin
  1

• Stringency in the NanoMethPhase paper

  #17 opened 2 years ago by weishwu
  2

• phasing in blocks

  #16 opened 2 years ago by weishwu
  5

• Variant caller for non-human samples

  #2 opened 4 years ago by PengNi
  4

• NanoMethPhase with other methylation callers outputs

  #13 opened 2 years ago by Thomas-nj
  3

• bam2bis creates empty files

  #12 opened 2 years ago by Marozi2
  7

• Reproduce Fig.4 a-b and Additional file 4.

  #11 opened 2 years ago by liuyang2006
  2

• working with Guppy latest version

  #10 opened 2 years ago by charliechen912ilovbash
  4

• Cannot run nanomethphase.py phase TypeError: 'NoneType' object is not subscriptable

  #9 opened 2 years ago by kir1to455
  5

• the index for measuring DMR

  #8 opened 3 years ago by charliechen912ilovbash
  6

• Cannot run nanomethphase.py phase TypeError: 'NoneType' object is not subscriptable

  #6 opened 3 years ago by kseniadey
  1

• "Error in mcexit(0L) : ignoring SIGPIPE signal" in dma/DSS step

  #7 opened 3 years ago by PengNi
  9

• NanoMethPhase compatibility with Megalodon output

  #5 opened 3 years ago by cstill3928
  4

• How do you upload nanopore raw fast5 to EGA?

  #4 opened 3 years ago by PanZiwei
  6

• Does NanoMethPhase support Clair3?

  #3 opened 3 years ago by PanZiwei
  5

• VCF file 'Format' and 'Sample' columns

  #1 opened 4 years ago by skambha6
  4