A repository that contains analysis code for the paper "Determinants of the microbiome spatial variability in chronic rhinosinusitis" by Szaleniec et al. 2022.
The analysis is split in two folders, microbiome-analysis and picrust2-analysis.
In the first folder, the microbiome analysis using QIIME2 is stored. In folder microbiome-analysis/artifacts you may find a custom feature classifier produced with the use of RESCRIPt.
In the second folder, we performed functional prediction using PICRUSt2 & analyzed the predictions obtained from the pipeline.
