qiime2
There are 60 repositories under qiime2 topic.
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
biocore/gemelli
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
biocore/empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis
sbslee/dokdo
A Python package for microbiome sequencing analysis with QIIME 2
cafferychen777/MicrobiomeStat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Gibbons-Lab/isb_course_2022
Materials and presentation for the 2022 ISB Microbiome course.
Gibbons-Lab/isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
olabiyi/snakemake-workflow-qiime2
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
micom-dev/q2-micom
A Qiime plugin for MICOM.
mghotbi/DspikeIn
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
biomarv/16S-rRNA-gene-analysis-using-QIIME2
QIIME2 worklflow. From raw data to a feature table.
EmoryIntegratedComputationalCore/Methods
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
telatin/qax
Qiime2 Artifact eXtractor
BryanAbuchery/16S-rRNA-End-to-End-Analysis
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
gibsramen/evident_
Effect size calculations for microbiome data
PlantGGHLab/qiime2-nf
Microbiome analysis with QIIME2
bokulich-lab/q2-protein-pca
QIIME2 plugin for PCA analysis of protein sequence phylogeny.
mbbu/16S-mini-project
This is a workflow for 16S rRNA analysis.
bioinfonupeb/redemicro-ana-flavia-nutri
Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"
Elcornevic/metaRdum
Welcome to 'Metagenomics in R for Dummies'! Are you interested in learning the essentials of metagenomics in a short period of time? You've reached the right repos!
focussash/MiCoMo-Manuscript
Files for the MiCoMo project and manuscript
johannabosch/Microbiome-Analysis-Using-Clusters
This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
rjstevick/NBayTNCoystersAnalysis
Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay
yjiakang/amplicon
amplicon pipeline
Zubair2021/16S_Microbiome_Analysis
This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
bioinfonupeb/microbiota_da_mulher_lbbm
Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP
biology-examples/microbiome
scripts for microbiome analysis
biota-inc/q2-shared_asv
q2-shared_asv is a QIIME 2 plugin for shared ASV analysis.
FranckLejzerowicz/microbiome_analyzer
Command line tool that writes commands to run one by one to perform analyses (mainly using qiime2) on a HPC running Slurm, Torque or none of these.
HSapers/q2-decontam
qiime2 decontam plugin
natmurad/amplicon16S
Analysis for amplicon data
noriakis/q2-pathway
QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
ohmeta/qiimepi
Snakemake version of QIIME2
SergioAlias/sporeflow
🦠 SporeFlow: Fungal ITS metataxonomics pipeline
sPuntinG/Galaxea_Microbiome_PCI
Code and raw data for *Galaxea fascicularis* microbiome data analysis