valentynbez
MD, PhD student in Bioinformatics. Studying massive genomic datasets and producing software to do it better.
Sunagawa Lab @ ETH ZürichZürich, Switzerland
Pinned Repositories
gantt-chart
Python code for easy Gantt chart generation
metagenome_assembly
WDL Workflow for metagenome assembly
Metagenomic-DeepFRI
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
q2-mOTUs
camda2021-dili
CAMDA 2021 winning solution for "Literature AI for Drug Induced Liver Injury" challenge
metagenome_assembly
WDL Workflow for metagenome assembly
Metagenomic-DeepFRI
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
sinuses_2023
tmvec
valentynbez's Repositories
valentynbez/automate-solutions
"Automate the Boring Stuff" Practice Tasks Solutions
valentynbez/data
Data and code behind the articles and graphics at FiveThirtyEight
valentynbez/kaggle-competitions
Archive for Kaggle competitions.
valentynbez/math-sheets
Archive for my math self-education
valentynbez/mit-deep-learning
Tutorials, assignments, and competitions for MIT Deep Learning related courses.
valentynbez/practicepython-solutions
Solutions for exercises from pythonpractice.org
valentynbez/reinforcement-learning
Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.
valentynbez/simple-games
Simple games in Python
valentynbez/sphinx-tutorial
An opinionated tutorial on Sphinx.
valentynbez/ten-rules-jupyter
Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks
valentynbez/thinking-in-tensors-writing-in-pytorch
Thinking in tensors, writing in PyTorch (a hands-on deep learning intro)