Pinned Repositories
Blog
letmeguesswhereyourefrom.com
A small web application that predicts where a name is from
PhD-Thesis
python-gprofiler
Reading-PCA
scilife-python-course
single-cell-studies
Example analysis using the 'Single cell studies database'
umis
Tools for processing UMI RNA-tag data
vals's Repositories
vals/scilife-python-course
vals/SdA
Stacked denoising Autoencoder dimennsionality reduction
vals/bcbb
Useful bioinformatics code, primarily in Python and R
vals/mapper.py
Python implementation of "MAPPER: PARTIAL CLUSTERING IN MATLAB"
vals/RSeQC
This is a fork of RSeQC, since the Sourceforge hosting of the project doesn't link to any repository.
vals/Boutonniere
vals/clj-rosalind
vals/goatools
Python scripts to find enrichment of GO terms
vals/importing_issue
vals/modules.sf.net
Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)
vals/msc-thesis
vals/scilifelab
Misc code snippets for Science For Life Laboratory
vals/scilifelab_bcbio
Scilifelab-specific code for bcbio-nextgen, linked via git submodules
vals/status
Tornado web app for visualizing information and statistics regarding SciLifeLab Genomics platform operations.
vals/eXpress
Streaming fragment assignment and quantification for high-throughput sequencing.
vals/google_devnull
Google devnull stockholm competition
vals/ipython-cluster-helper
Tool to easily start up an IPython cluster on different schedulers.
vals/logbook
A cool logging replacement for Python. Under construction
vals/monocle-release
vals/multiprocessing_amqp
Small examples showing that amqp messaging silently fails in multiprocessing pool
vals/murenzhuang
Mu Ren Zhuang is an exercise form to practice Code Flexibility - something I have not seen before
vals/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
vals/python_koans
Python Koans - Learn Python through TDD
vals/ratatosk
vals/ratatosk.ext.scilife
Ratatosk extension for use at Science for Life Laboratory
vals/readfq
Fast multi-line FASTA/Q reader in several programming languages
vals/scipy
Scipy library main repository
vals/square-vis
Quil based scatterplot frontend which plots squares from a backend mongodb database.
vals/UBD
FinalVersions
vals/wegliv