vdemichev/DiaNN

Issues

• Mass Accuracy Calculation

  #1303 opened a month ago by SahilCh95
  16

• .net SDK version requirement?

  #1306 opened a month ago by apv348
  1

• Some `.raw` files cannot be read.

  #1304 opened a month ago by zhh-pedestrian
  4

• Question about Q-values and MBR

  #1297 opened a month ago by SahilCh95
  2

• Producing predicted library from a tsv file

  #1235 opened a month ago by yangkl96
  2

• DIA-NN runs fast or slow, depending on the run

  #1282 opened 2 months ago by L3ft2di3
  9

• Big Fatsa Document

  #1298 opened a month ago by zhh-pedestrian
  1

• Logical cpu cores depends on number of input files ?

  #1295 opened 2 months ago by GeorgeCMarinescu
  5

• PTM with no unimod ID

  #1296 opened 2 months ago by BrBella
  3

• Cannot Load RAW Files from Mapped Filesystem in DIANN 1.9.2 on Windows 11 Pro

  #1289 opened 2 months ago by rolivella
  2

• Protein Inference

  #1290 opened 2 months ago by SahilCh95
  6

• Clarification how "isoforms" are parsed from Fasta-header (pg-level 0 vs pg-level 1)

  #1291 opened 2 months ago by jjGG
  2

• dia-nn uses 12 cores only out of the 76 available

  #1269 opened 2 months ago by GeorgeCMarinescu
  4

• Two Questions: About Fragment.info Column in Ver. 1.9 & Meaning of MS2.Scan

  #1286 opened 2 months ago by dong-gi-jang
  2

• DIA-NN 1.9.2 only generating first-pass reports

  #1284 opened 2 months ago by SahilCh95
  4

• Skyline visualization bugs

  #1288 opened 2 months ago by Apirog9
  3

• using --matrices causes std::length_error on linux cluster

  #1287 opened 2 months ago by Andre-C-M
  2

• How Can I use peak visualization function with Skyline

  #1285 opened 2 months ago by k12-sasaki
  2

• DIANN1.9 and 1.9.1

  #1242 opened 3 months ago by naiyoubuding
  3

• first search much higher with 1.9.2 and MBR using speclib prediction with supplied library

  #1281 opened 2 months ago by jessegmeyerlab
  1

• Should CAMthiopropanoyl-Modification Be Set as a Dynamic or Static Modification?

  #1280 opened 2 months ago by 95dari
  2

• How to increase processing speed for phosphoproteomics data in DIA-NN?

  #1278 opened 2 months ago by demhibou
  1

• the two-species spectral library

  #1279 opened 2 months ago by lzw150
  1

• dimethyl plexDIA

  #1270 opened 2 months ago by cutleraging
  10

• Some questions about DIA-NN output

  #1277 opened 2 months ago by wumingxiaocuier
  4

• DiaNN output problem

  #1276 opened 2 months ago by Baopusr
  1

• Issues recreating the automatically generated report.pg_matrix (unsure of filters used)

  #1273 opened 2 months ago by ore-sol
  1

• Fixed Modification configuration

  #1274 opened 2 months ago by franklyn7890
  1

• Inconsistent PG Q-value for multiple precursors of the same run and PG

  #1262 opened 2 months ago by hollenstein
  4

• Spectral Library Generation with DIA-NN for Human and Bovine Blood Samples

  #1268 opened 2 months ago by Mnago
  2

• How to handle when protein groups id contains semicolons

  #1267 opened 2 months ago by Gambrian
  2

• It didn't generate a .speclib format file for Skyline

  #1258 opened 2 months ago by Yx556
  2

• Failed after generating precursor levels matrix

  #1266 opened 2 months ago by yashacode
  4

• issue with xic parquet path in linux version

  #1260 opened 2 months ago by heejongkim
  6

• diann stop working (1.9.2)

  #1251 opened 2 months ago by Kokoushin
  5

• MBR and smart profiling

  #1263 opened 2 months ago by xiaosiruwei
  1

• Wrong DiaNN Version in README

  #1254 opened 2 months ago by hollenstein
  2

• Processing data with heavy labelled proteins and/or peptides

  #1253 opened 2 months ago by SStoychev01
  3

• WARNING: only in silico predicted libraries should be loaded in the .speclib format;

  #1256 opened 2 months ago by li20041
  2

• Questions regarding lactylation modifications in DIANN version 1.9.1 windows

  #1248 opened 2 months ago by ZHBHSMILE
  4

• DIANN 1.9.2 - Single pass and double pass NN give exact same results

  #1250 opened 2 months ago by rodvrees
  3

• Modified peptide quantification

  #1249 opened 2 months ago by zoe1985
  1

• Reading. quant failed

  #1245 opened 2 months ago by xiaosiruwei
  1

• From fragment.Quant.Raw to Precursor.Quantity

  #1237 opened 3 months ago by FDelalande
  3

• Is it possible to execute multiple instances of DIANN 1.9.1 simultaneously on Linux?

  #1243 opened 3 months ago by zplv686
  1

• Insufficient system memory or apptainer/singularity platform

  #1236 opened 3 months ago by hosseinvk
  2

• Spectral library generation difference between 1.91 and 1.9.2

  #1241 opened 3 months ago by 3399R
  2

• Why generate an in silico-predicted library in the first place?

  #1238 opened 3 months ago by FDelalande
  1

• same peptide seq but different STY localization probability of same Serine amino acid

  #1234 opened 3 months ago by singhsk2622
  6

• the output file is empty

  #1233 opened 3 months ago by oogene
  1