Pinned Repositories
3DSkell
Skeletonization of 3D binary volumes
bbsnake
Into to the snakemake package
deep-learning-models
Keras code and weights files for popular deep learning models.
Image2Graph
Tool to perform graph-based segmentation tasks on images
JPG-PNG-to-MNIST-NN-Format
Python/Bash scripts for creating custom Neural Net Training Data -- this repo is for the MNIST format
MitoGraph
Software for Quantifying Mitochondrial Content in Live Cells
Mitograph_Distance
Measure the distances between 3D particle position and closest points of the vtk surface file
MitoGraphTools
ImageJ macros to help you prepare your data to use with MitoGraph and example dataset
MoCo
Model Convolution for Mitochondrial Networks
ssFiji
Set of macros for image processing in Fiji
vianamp's Repositories
vianamp/MitoGraph
Software for Quantifying Mitochondrial Content in Live Cells
vianamp/MitoGraphTools
ImageJ macros to help you prepare your data to use with MitoGraph and example dataset
vianamp/3DSkell
Skeletonization of 3D binary volumes
vianamp/Mitograph_Distance
Measure the distances between 3D particle position and closest points of the vtk surface file
vianamp/MoCo
Model Convolution for Mitochondrial Networks
vianamp/ssFiji
Set of macros for image processing in Fiji
vianamp/bbsnake
Into to the snakemake package
vianamp/deep-learning-models
Keras code and weights files for popular deep learning models.
vianamp/Image2Graph
Tool to perform graph-based segmentation tasks on images
vianamp/JPG-PNG-to-MNIST-NN-Format
Python/Bash scripts for creating custom Neural Net Training Data -- this repo is for the MNIST format
vianamp/LatAmSysBio2017-ImageAnalysis
Material for the workshop on Image Analysis in ImageJ
vianamp/LoopFinder
Loop Detection in Graphs via Brute Force Search
vianamp/MBCellVol
Mitochondria-Based Cell Volume
vianamp/MitoGraphGeo
Analysis of Spatial Organisation of Mitochondrial Networks
vianamp/MitoMembranes
Generate 3D surface models for inner and outer membranes of mitochondria.
vianamp/MItoPlanar
Planar graph model for mitochondrial network
vianamp/SeasonalSIS
This routine implements a continuous time approach for SIS model that includes seasonality in the disease transmissibility.
vianamp/ShellExpansion
Segmentation algorithm based on region-growing
vianamp/ssDual
Generate a Dual Representation for a Given Spatially Embedded Graph
vianamp/ssTools
Set of tools for working on 3D volumes.
vianamp/SupernovaSeg
Segmentation of 3D yeast cell contour
vianamp/trackins
Dashboard for Tracking Inspection
vianamp/Utils
Compendium of Scripts
vianamp/WidthMap
Calculate width of mitochondrial tubules and map the width over the respective skeleton and surface.
vianamp/YeastRevolution
Simple script to create a 3D revolution from a 2D object about its longest axis