/YeastRevolution

Simple script to create a 3D revolution from a 2D object about its longest axis

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

YeastRevolution

Simple script to create a 3D revolution from a 2D object about its longest axis

To run:

python cell_revolution.py --bf 01_002b-1_BF.tif --fp 01_002b-1_GFP+DAPI.tif --save merged3d.tif

where:

-bf specifies the path to the bright filed image that was segmented and contains the binary object.

-fp specifies the path to the two-channels fp image that contains nucleus segmentation and structure segmentation in this order.