Pinned Repositories
brca-website
brca_pilot
allele specific gene expression analysis pipeline
converters
different file format converters
d3-timeline
Simple JS timeline plugin for d3
deseq-hts
A Galaxy wrapper for DESeq program
genomeutils
Genome sequence and annotation processing utils
GFFtools-GX
gfftools - Galaxy toolshed repository
oqtans
Online Quantitative Transcriptome Analysis
pcr_primers
primer design using primer3
pyjobrunner
An extension of pythongrid program
vipints's Repositories
vipints/GFFtools-GX
gfftools - Galaxy toolshed repository
vipints/converters
different file format converters
vipints/genomeutils
Genome sequence and annotation processing utils
vipints/oqtans
Online Quantitative Transcriptome Analysis
vipints/brca_pilot
allele specific gene expression analysis pipeline
vipints/deseq-hts
A Galaxy wrapper for DESeq program
vipints/pcr_primers
primer design using primer3
vipints/pyjobrunner
An extension of pythongrid program
vipints/brca-website
vipints/d3-timeline
Simple JS timeline plugin for d3
vipints/deepseq
Deep sequencing data analysis programs
vipints/gfftools
GFF/GTF file processing utilities
vipints/gx-utils
Galaxy Utils used for oqtans public instance
vipints/hgvs
HGVS variant name parsing and generation
vipints/HTSHelpers
HTS helper methods for normalizing and plotting in R
vipints/KEngine-GX
Galaxy tools for clinical science
vipints/NuPoP-GX
Nucleosome Positioning Prediction
vipints/promoter_eval
promoter evaluation procedures
vipints/pythongrid
High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ
vipints/shogun
The Shogun Machine Learning Toolbox (Source Code)
vipints/SInBaD-GX
Exploring functional variant discovery in non-coding regions
vipints/TaskManager
Job submitter programs
vipints/tdu_htscreen
vipints/timelinebrowser
Visualization app
vipints/tool_dep_packages
galaxy tool dependency packages
vipints/TranscriptSkimmer
TranscriptSkimmer: Generate high confidence transcript structures from RNA-Seq data
vipints/trsk
Transcript skimmer: generate high confidence transcript structures from RNA-Seq data
vipints/tutorials_2014
tri institutional tutorials_2014 materials
vipints/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms