Introduction ============ NuPoP is a software tool for Nucleosome Positioning Prediction. For more information on NuPoP and the methods - http://nucleosome.stats.northwestern.edu/ What it does ============ [a] It can handle multiple fasta sequence in a query file to predict nucleosome occupancy. [b] Multiple result file format, Plain text based result and Wiggle fixedStep format based on users request. [c] Produce binary files of nucleosome occupency score and corresponding positions in the genomic sequence. The binary file path can be found in NuPoP Log file. Deployment ========== [a] Clone this repository to your local deployment station. [b] Execute the perl script "changePath.pl" to set up the absolute profile file path based on your local station. "perl changePath.pl" [c] Please make sure that Biopython is installed in your local station. [d] Move the sample files from test-data folder to galaxy test-data folder. Contents ======== src [a] Fortran core program. galaxy [a] Pythonic interface to the core program. [b] Tool configuration file. test-data [a] Test files for running functional tests. Contact ======= Please let me know if you find any difficulty to integrate into Galaxy. I can be reached at vipin <at> cbio.mskcc.org