Pinned Repositories
annotation-simulation
Code to generate ontology annotated objects (e.g. HPO annotated patients)
attributedb
awesome_project
BAMSampler
basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
beautiful-jekyll
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
bih-cluster
BIH Cluster Wiki
seqIOLib
sequence_cnn_models
simdrom
Simulate Exomes or Genomes and spike in mutations
visze's Repositories
visze/sequence_cnn_models
visze/seqIOLib
visze/attributedb
visze/awesome_project
visze/bih-cluster
BIH Cluster Wiki
visze/bioconda-recipes
Conda recipes for the bioconda channel.
visze/charite.github.io
Charité Computational Biology Website
visze/cookiecutter-snakemake-workflow
A cookiecutter template for Snakemake workflows
visze/cookiecutter-snakemake-wrappers
Cookiecutter template for snakemake wrappers.
visze/denovoTF
Calculating change in binding affinity for predicted TF binding sites as a result of de novo mutations in non-coding regions. Uses JASPAR database for TF binding prediction.
visze/DNA-FMs
"Heavily inspired from InstaDeep's GitHub repository"
visze/encode_utils
Tools that are useful to any ENCODE submitting group.
visze/HEMDAG
visze/hemoMIPs
Automated analysis and result reporting for targeted sequencing data
visze/igv-notebook
Module for embedding igv.js in an IPython notebook
visze/jannovar
Java framework for annotating VCF files with gene/transcript-based annotations
visze/leeHom
Bayesian reconstruction of ancient DNA fragments
visze/MA
visze/MPRA_SaturationMutagenesis
R Shiny website of the Saturation Mutagenesis manuscript
visze/MPRAflow
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
visze/MPRAsnakeflow
new implementation of MPRAsnakeflow fork of MPRAflow
visze/negative_training_sampler
visze/new_project
test snakemake workflow
visze/parSMURF
visze/ReMM
visze/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
visze/snakemake-workflow-template
A template for standard compliant snakemake-workflows
visze/snakemake_wrappers
snakemake wrappers to share with others and to us ethem in multiple projects
visze/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
visze/zenodo-upload
upload big files to Zenodo using cURL, jq and bash