vitessce/vitessce-python

Issues

• Anywidget cleanup function

  #246 opened a year ago
  0

• Spatial view coordinates flipped.

  #245 opened 2 years ago
  0

• Support RDS files

  #292 opened 2 years ago
  0

• Use base_dir and OOP api in `demos`

  #243 opened 2 years ago
  0

• Creating a configuration with multiple OME-Zarr using `MultiImageWrapper` fails

  #242 opened 2 years ago
  2

• Document how to install latest version or particular branch from github

  #241 opened 2 years ago
  0

• Support Spatial CUT&tag and spatial ATAC formats

  #291 opened 2 years ago
  0

• Support Vizgen example formats

  #290 opened 2 years ago
  0

• Support Nanostring example formats

  #289 opened 2 years ago
  0

• Base_dir mode

  #239 opened 2 years ago
  1

• Proxy parameter for vc.web_app

  #236 opened 2 years ago
  0

• Debug mode

  #235 opened 2 years ago
  0

• Check adata.obs and adata.var column dtypes in optimize_adata

  #233 opened 2 years ago
  0

• Perform validation of data (local only?) passed to wrapper classes, with parameter to opt out

  #232 opened 2 years ago
  1

• Can't load figures

  #231 opened 2 years ago
  10

• Support cellranger outputs

  #288 opened 2 years ago
  0

• Fix `feature_labels_path` bug in AnnDataWrapper class

  #229 opened 2 years ago
  1

• Support SpatialTis

  #287 opened 2 years ago
  0

• Support SpatialData

  #286 opened 2 years ago
  3

• Support spateo formats

  #285 opened 2 years ago
  0

• Support MuData objects

  #284 opened 2 years ago
  1

• Support bento formats

  #283 opened 2 years ago
  0

• Add JS CDN fallback urls

  #228 opened 2 years ago
  3

• Remove usage of temp directory in AbstractWrapper

  #227 opened 2 years ago
  0

• Move `coordination_values` parameter to AbstractWrapper class

  #226 opened 2 years ago
  0

• Add to_disk function for circular psuedo-segmentations (as an alternative for to_diamond)

  #225 opened a year ago
  0

• Error if `out_dir` exists and is not empty in export_to_files (with option to ignore)

  #223 opened 2 years ago
  0

• Include file extensions in UIDs for cleaner exports

  #222 opened a year ago
  0

• Render notebooks into docs

  #221 opened 2 years ago
  0

• Support writing pyramidal OME-TIFF and OME-NGFF

  #282 opened 2 years ago
  0

• Copy less data

  #216 opened 2 years ago
  0

• upgrade vitessce version?

  #209 opened 2 years ago
  4

• OmeTiffWrapper fails to read a local file from img_path if space character is in the name

  #207 opened 2 years ago
  0

• widget fails to load "vitessce-jupyter.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)"

  #208 opened 2 years ago
  5

• Nbconvert output of html/javascript in output does not render in 6.5 (works still in 6.4) #1844

  #206 opened 2 years ago
  2

• No longer installable in google colab?

  #204 opened 2 years ago
  4

• "Exception opening new comm"

  #198 opened 2 years ago
  6

• Sort components in JSON serialization

  #197 opened 2 years ago
  0

• Add TiffWrapper and OmeZarrWrapper classes

  #196 opened 2 years ago
  0

• JS version number in just one place

  #193 opened 2 years ago
  0

• Use node version manager and Node v16

  #190 opened 2 years ago
  0

• Last commit failed after merge

  #186 opened 2 years ago
  0

• Comma missing in const pairs

  #184 opened 2 years ago
  0

• Warn or error if VitessceConfig.__init__.schema_version is beyond that supported by the bundled JS package version

  #183 opened 2 years ago
  0

• Fix Examples

  #181 opened 2 years ago
  0

• Clean up `ValueError` TODO

  #178 opened 3 years ago
  0

• Use one version number for both PyPI and NPM

  #172 opened 2 years ago
  2

• Require schemaVersion parameter in VitessceConfig constructor

  #170 opened 2 years ago
  1

• Move from `master` to `main`

  #169 opened 3 years ago
  0

• Light-weight install doesn't work

  #167 opened 3 years ago
  0