vitessce/vitessce-python

Issues

• Enable `numpy` v2 Support/Unpin `numpy` v1

  #362 opened a month ago by NickAkhmetov
  1

• Use `uv` to manage dependencies in development environments, remove conda usage

  #377 opened a month ago by keller-mark
  0

• Convert spatialdata-plot plotting tree to Vitessce config

  #298 opened a year ago by keller-mark
  1

• Refactor wrappers.py

  #382 opened 2 months ago by keller-mark
  0

• Changelog

  #381 opened 2 months ago by keller-mark
  0

• Linting + Formatting

  #380 opened 2 months ago by ilan-gold
  0

• `layout.to_dict()` throwing: `TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'`

  #366 opened 3 months ago by ivirshup
  0

• Add python types

  #379 opened 2 months ago by ilan-gold
  0

• Separate dev dependencies from actual dependencies

  #376 opened 2 months ago by flying-sheep
  4

• ValueError: data too large for non-BigTIFF file

  #318 opened 3 months ago by J-Yash
  4

• Vitessce python on remote jupyter servers do not work

  #358 opened 3 months ago by edwin5588
  3

• Command functions should be able to return an updated config

  #359 opened 4 months ago by keller-mark
  1

• Warn if AnnDataWrapper options are empty as it would result in empty list for `vc['datasets']['files']`

  #356 opened 5 months ago by falexwolf
  4

• Ability to use comparative views + pageMode in a Jupyter notebook

  #351 opened 5 months ago by keller-mark
  0

• Define a plugin class/dataclass to couple on_config_change and anywidget.invoke handlers with plugin_esm

  #347 opened 5 months ago by keller-mark
  1

• Setting colors for obsSets?

  #339 opened 8 months ago by srivarra
  2

• Add option for widget to communicate directly with Zarr store (no local HTTP server)

  #322 opened 10 months ago by keller-mark
  2

• Support writing plugin_esm using local file with anywidget FileContents

  #348 opened 7 months ago by keller-mark
  0

• Notebooks environment.yml PackageNotFoundError for starlette==0.14.0

  #343 opened 8 months ago by thomcsmits
  0

• Notebooks errors (list)

  #344 opened 8 months ago by thomcsmits
  0

• Additional improvements to adata_to_multivec_zarr function

  #320 opened 10 months ago by keller-mark
  0

• Support using JSX for writing plugin views

  #334 opened 7 months ago by keller-mark
  0

• Adding Vitessce widgets to a visualization dashboard

  #345 opened 8 months ago by georgezakinih
  1

• Ensure widget works in Jupyter running in VSCode

  #255 opened 8 months ago by keller-mark
  8

• Helper function to use adata.uns[obs_set_col + "_colors"] for initial obs set colors

  #340 opened 8 months ago by keller-mark
  0

• Figure out how to surface JS errors in Python

  #256 opened a year ago by keller-mark
  1

• Support automatic instantiation of Wrapper objects

  #331 opened 9 months ago by keller-mark
  2

• Bumping supported Anndata Version?

  #327 opened 9 months ago by srivarra
  1

• OmeTiffWrapper - support coordinationValues and fileType: "image.ome-tiff"

  #309 opened a year ago by keller-mark
  0

• AnnDataWrapper - support for obsSpots, obsPoints, etc.

  #308 opened a year ago by keller-mark
  0

• Adding scale bar to spatial view image

  #311 opened a year ago by J-Yash
  0

• Minimal example for obsSegmentations.json for visualizing polygons in Spatial View

  #310 opened a year ago by J-Yash
  2

• Publish a Vitessce notebook on Posit Connect

  #306 opened a year ago by georgezakinih
  11

• Failed to load model class "Anymodel"

  #305 opened a year ago by CReihsmann
  2

• Demos for SquidPy example datasets

  #297 opened a year ago by keller-mark
  0

• Snakemake pipeline for 10x Genomics Multiome outputs

  #296 opened a year ago by keller-mark
  0

• End-to-end test that rerunning .display or .widget in same cell does not crash browser

  #247 opened 2 years ago by keller-mark
  0

• Figure out why omero metadata might be within multiscales[0] rather than at root level of .zattrs

  #257 opened a year ago by keller-mark
  2

• Convert flattened multi-level coordination JSON back to nested dict for `to_python`

  #294 opened a year ago by keller-mark
  0

• Validate configs on python side using `@vitessce/json-schema` NPM package

  #249 opened 2 years ago by keller-mark
  1

• error with UJSONResponse with Starlette v0.28.0

  #254 opened a year ago by keller-mark
  1

• Support BiocPy SingleCellExperiment

  #278 opened a year ago by keller-mark
  0

• Support emObject

  #293 opened 2 years ago by keller-mark
  0

• AnnDataWrapper.auto_view_config function not populating file URL, file type and options

  #261 opened a year ago by ivababukova
  0

• Support `uid` field in VitessceConfig constructor

  #269 opened a year ago by keller-mark
  0

• Refactor data_utils and extras_require

  #276 opened a year ago by keller-mark
  1

• Update `FileType` enum to match JS API values

  #270 opened a year ago by NickAkhmetov
  1

• ViewConfig.`use_coordination` with multiple coordinations of same type

  #271 opened a year ago by NickAkhmetov
  0

• Revert removal of data_type argument for VitessceConfigDatasetFile

  #265 opened a year ago by keller-mark
  0

• Add page describing data location options

  #251 opened a year ago by keller-mark
  0