vivekbhr/scRIApipe

Issues

• $tempdir

  #21 opened 3 years ago by vivekbhr
  0

• Add kallisto batch mode

  #3 opened 4 years ago by vivekbhr
  1

• Optional rule to create kallisto pseudoBAM

  #6 opened 5 years ago by vivekbhr
  0

• python wrapper + rule to do DE testing

  #8 opened 5 years ago by vivekbhr
  1

• skip indexing on user request

  #1 opened 4 years ago by vivekbhr
  2

• Rule to preprocess and cluster cells based on TCCs

  #5 opened 4 years ago by vivekbhr
  1

• python wrapper + rule to cluster cells by gene expression

  #7 opened 4 years ago by vivekbhr
  1

• merge MTX by EC IDs

  #12 opened 4 years ago by vivekbhr
  2

• Gene annotation

  #14 opened 4 years ago by vivekbhr
  0

• memory error while merging tcc from mutliple samples

  #10 opened 5 years ago by vivekbhr
  1

• Add rule to merge tcc_count matrices

  #4 opened 5 years ago by vivekbhr
  1

• Add a step to create cDNA fasta from genome and GTF file

  #2 opened 5 years ago by vivekbhr
  1

• implement testing

  #13 opened 5 years ago by vivekbhr
  0

• Create overall kallisto alignment report

  #9 opened 5 years ago by ThijsMakaske
  0