Pinned Repositories
sincei
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data
deepTools
Tools to process and analyze deep sequencing data.
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
cage_pipeline
Pipeline for CAGE data analysis using icetea
doctorRbite
An updated R Markdown thesis template using the bookdown package, for University of Freiburg
icetea
R/Bioconductor package for analysis of single and paired-end capped-RNAseq data (CAGE/RAMPAGE/MAPCap)
reproChecklist
#eLifeAmbassadors reviewer's checklist for assessing reproducibility of computational methods in life science publications
Subread_to_DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
vivekbhr's Repositories
vivekbhr/AlleleExplorer
Tools for analysis of alleleSpecific mapping
vivekbhr/AlleleSpecific
scripts for allele-specific mapping of short reads
vivekbhr/CAGEr
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/CAGEr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=CAGEr.
vivekbhr/CSAMA2016
Git and Github with CSAMA2016
vivekbhr/csaw
Clone of the Bioconductor repository for the csaw package, see https://bioconductor.org/packages/devel/bioc/html/csaw.html for the official development version.
vivekbhr/datasharing
The Leek group guide to data sharing
vivekbhr/DESeq2
Differential gene expression analysis based on the negative binomial distribution
vivekbhr/dm6_bsgenome
A bsgenome object to use for drosophila (dm6), created from ensembl
vivekbhr/HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
vivekbhr/hugo-universal-theme
Port of the Universal theme to Hugo
vivekbhr/jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
vivekbhr/LearnR
Collecting learning resources in R
vivekbhr/mitoblacklist
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
vivekbhr/policies-database
Database of journal policies: TRANsparency in Scholarly Publishing for Open Scholarship Evolution
vivekbhr/rna-seq-qc
Rna-seq pipeline, From FASTQ to differential expression analysis...
vivekbhr/SeqGrapheR
Simple GUI for graph based visualization of cluster of DNA
vivekbhr/SNPsplit
Allele-specific alignment sorting
vivekbhr/suspenders
Automatically exported from code.google.com/p/suspenders
vivekbhr/table
table class for GNU Octave (not finished)
vivekbhr/training-material
A collection of training material from offered Galaxy courses
vivekbhr/tutorials
My collection of tutorials in bioinformatics
vivekbhr/vivlib
Useful wrappers and functions for RNA-Seq analysis