vllorens
Postdoctoral researcher at the VIB-KU Leuven Center for Microbiology, studying the functionality of the gut microbiota.
Leuven, Belgium
Pinned Repositories
basedocker
Base docker file to use in other projects
benchmark_microbiome_transformations
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
CMSclassifier
covid19_respiratory_microbiome
Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"
MDAW_hands_on_1_data_preprocessing
Hands-on #1 from the Microbiome Data Analysis Workshop (https://mdawo.meetinghand.com/)
MDAW_hands_on_2_data_normalization
Hands-on #2 from the Microbiome Data Analysis Workshop (https://mdawo.meetinghand.com/)
metaester
Simulate metatranscriptomics datasets
polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
QMP
Quantitative Microbiome Profiling
wc2019
Tutorial on modeling metabolic pathways with ODEs, from the EMBO Whole Cell Modeling summer school
vllorens's Repositories
vllorens/benchmark_microbiome_transformations
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
vllorens/wc2019
Tutorial on modeling metabolic pathways with ODEs, from the EMBO Whole Cell Modeling summer school
vllorens/basedocker
Base docker file to use in other projects
vllorens/CMSclassifier
vllorens/covid19_respiratory_microbiome
Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"
vllorens/MDAW_hands_on_1_data_preprocessing
Hands-on #1 from the Microbiome Data Analysis Workshop (https://mdawo.meetinghand.com/)
vllorens/MDAW_hands_on_2_data_normalization
Hands-on #2 from the Microbiome Data Analysis Workshop (https://mdawo.meetinghand.com/)
vllorens/metaester
Simulate metatranscriptomics datasets
vllorens/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
vllorens/QMP
Quantitative Microbiome Profiling
vllorens/syntheticGutCommunity
Code to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"
vllorens/vllorens.github.io
Personal website of Veronica Llorens Rico