vmshirey
Biodiversity Data Scientist.
Department of Biological Science, University of Southern CaliforniaWashington, DC
Pinned Repositories
occ_historical
LepTraits
ANSPENT_Co-op
Repository for ANSP Entomology digitization related materials, guides, and other useful information.
biodiv_viz
Contains data and visualizations relevant to various biodiversity data visualization presentations and posters including those presented at SPNHC 2017.
BIOL419_ordination
A test of different ordination techniques for a trait based dataset.
body_size_results_visualization
butterflySampling
collectionsSankey_R
Used to create sankey flow diagrams for visualization, relies on googleVis and iGraph. See readme.
DataDrivenDiscoveryPerspective
GVisShiny_dev
Active development for a shiny application that integrates the GoogleVis package in R. Specifically used for generating Sankey Flow Diagrams for collection characterization.
vmshirey's Repositories
vmshirey/biodiv_viz
Contains data and visualizations relevant to various biodiversity data visualization presentations and posters including those presented at SPNHC 2017.
vmshirey/butterflySampling
vmshirey/GVisShiny_dev
Active development for a shiny application that integrates the GoogleVis package in R. Specifically used for generating Sankey Flow Diagrams for collection characterization.
vmshirey/ANSPENT_Co-op
Repository for ANSP Entomology digitization related materials, guides, and other useful information.
vmshirey/BIOL419_ordination
A test of different ordination techniques for a trait based dataset.
vmshirey/body_size_results_visualization
vmshirey/collectionsSankey_R
Used to create sankey flow diagrams for visualization, relies on googleVis and iGraph. See readme.
vmshirey/DataDrivenDiscoveryPerspective
vmshirey/fin_spatialBias
Paper associated data and scripts for simulation, statistics, and figure generation.
vmshirey/fireMeta
Statistics used for a fire meta-analysis.
vmshirey/globnet_shiny
For visualizating entomology type collection data in a global network projection.
vmshirey/HighLatitudeNorthAmericanButterflyOccupancy
vmshirey/parset_ent_types
Rework of a previous project that used Sankey diagrams. This project experiments with parallel set visualization to maintain identity from node to node.
vmshirey/richness.change
scripts to estimate richness change based on historical data
vmshirey/rl_spiders
Code used to obtain records given a taxonomic list of spider from GBIF and calculate extent of occurrence (EOO) for each species. EOO is a metric used in IUCN Red Listing.
vmshirey/roadsideProximity
A script for calculating proximity to road features from raster and species occurrence data.
vmshirey/spiders
vmshirey/Symbiota
Symbiota Virtual Flora/Fauna project is an open source software project with central goals of developing online search engines and tools that will aid in the exploration & management of biodiversity data (herbarium specimens, images, checklist, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114
vmshirey/symbiota_dev
Personal development repository for Symbiota
vmshirey/symbiotaToSpecifySQL
Needed to push data from the omoccurrences table in Symbiota to Specify. Includes handling functions to parse serialized collector names to individual collectors (agents). This code is not complete, but provides a springboard for shuttling data between systems.
vmshirey/toDwC
Takes non-DwC conforming biodiversity data and manipulates it into a simple DwC conforming dataframe.
vmshirey/vmshirey
vmshirey/vmshirey.github.io
Personal website.