wagnerde

conda-envs

Diaz2019

Analysis of single-cell RNA seq data appearing in Diaz & Wagner et al (Nature 2020)

ISCC_Shivdasani

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scTools

A collection of Matlab scripts for processing and analyzing single-cell RNAseq datasets

scTools-bash

Bash scripts for formatting FASTQ files

scTools-py

A collection of Python helper functions for scRNAseq data analysis.

STITCH

Assembles a graph manifold from time series single-cell RNAseq data

TracerSeq

Matlab code for processing inDrops TracerSeq FASTQ files and calculating state-lineage couplings

TracerSeq-py

Python module for processing and analyzing TracerSeq datasets

wagnerde/STITCH

Assembles a graph manifold from time series single-cell RNAseq data

wagnerde/Diaz2019

Analysis of single-cell RNA seq data appearing in Diaz & Wagner et al (Nature 2020)

wagnerde/scTools

A collection of Matlab scripts for processing and analyzing single-cell RNAseq datasets

wagnerde/scTools-py

A collection of Python helper functions for scRNAseq data analysis.

wagnerde/TracerSeq

Matlab code for processing inDrops TracerSeq FASTQ files and calculating state-lineage couplings

wagnerde/conda-envs

wagnerde/ISCC_Shivdasani

wagnerde/scanpy

Single-cell analysis in Python. Scales to >1M cells.

wagnerde/scTools-bash

Bash scripts for formatting FASTQ files