Pinned Repositories
bxtools
Tools for analyzing 10X Genomics data
ginseng
Tools for 1D and 2D genomic significance analysis
KDTree
Simple C++ KD-Tree implementation
pthread-lite
Light-weight header library for C++ concurrency with pthread
roverlaps
Fast and memory efficient genomic range overlaps for R
SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
svaba
Structural variation and indel detection by local assembly
svlib
Toolkit for extracting SVs from long sequences and benchmarking variant callers
VariantBam
Filtering and profiling of next-generational sequencing data using region-specific rules
varval
Rearrangement validation through targeted sequence realignment
walaj's Repositories
walaj/encode-download
Download and process tracks from ENCODE
walaj/apophenia-clone
Copy of distribution version of Apophenia, with added statistical models
walaj/svlib
Toolkit for extracting SVs from long sequences and benchmarking variant callers
walaj/pthread-lite
Light-weight header library for C++ concurrency with pthread