walterxie

System development, data analysis, and IT solution for phylogenetics, phylogenomics, metagenomics, bioinformatics, computational biology, etc.

Centre for Computational Evolution, University of AucklandAuckland, NZ

Pinned Repositories

tracer
Posterior summarisation in Bayesian phylogenetics
Language:Java54 26 17517
beast-phylonco
A BEAST2 package for single-cell cancer evolution
Language:Java6 4 282
beast2
Bayesian Evolutionary Analysis by Sampling Trees
Language:Java239 40 1.1k84
linguaPhylo
LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
Language:Java19 10 4997
linguaPhylo.github.io
LinguaPhylo website including tutorials and posts.
Language:HTML3 5 141
LPhyBeast
Convert LPhy scripts to BEAST 2 XML
Language:Java3 6 1481
ComMA
Community Matrix Analysis
Language:HTML2 2 01
eDNA-pipeline
eDNA pipeline
Language:R3 3 10
structure-tutorial
STRUCTURE tutorial
1 3 01
TraceR
Simplified Tracer in R and Extras
Language:Jupyter Notebook8 3 01

walterxie's Repositories

walterxie/TraceR
Simplified Tracer in R and Extras
Language:Jupyter Notebook8 3 01
walterxie/eDNA-pipeline
eDNA pipeline
Language:R3 3 10
walterxie/structure-tutorial
STRUCTURE tutorial
1 3 01
walterxie/assignment-prs
Language:R
walterxie/b2.7mig
Tools for migrating to BEAST 2.7
Language:Java
walterxie/B2Utils
Some tools for beast 2 projects
Language:Java
walterxie/b2xml
Data visualisation from BEAST 2 XML
Language:R2 0
walterxie/BayesianInference
Language:R2 0
walterxie/bdtree
migrate to beast 2.7
Language:Java
walterxie/beast-graphics
Migrate to BEAST 2.7
Language:Java0 0
walterxie/beast2
Bayesian Evolutionary Analysis by Sampling Trees
Language:Java2 0
walterxie/beast2stats
Basic statistics of BEAST2 development
Language:HTML2 0
walterxie/besp
Migration to BEAST 2.7
Language:Java0 0
walterxie/BioSci700
Language:HTML1 0
walterxie/CitationManager
Analyse citations from locally installed BEAST 2 packages
Language:Java2 0
walterxie/ConstantDistanceOperator
Migration to BEAST 2.7
Language:Java
walterxie/figtree
Forked from rambaut/figtree
Language:Java0 0
walterxie/flc
Local clock model using relaxed and strict clocks
Language:Java0 2
walterxie/frombeast1
import beast1 models to beast2
Language:Java2 0
walterxie/funcaudit
List all phylogenetic models in term of specification
Language:Java
walterxie/HumanGenome
Language:Java1 0
walterxie/jebl2
Automatically exported from code.google.com/p/jebl2
Language:Java1 0
walterxie/JPMSTest
testing conflict dependencies under Java Platform Module System
Language:Java2 0
walterxie/ldpred
Language:Python2 0
walterxie/ldsc
LD Score Regression (LDSC)
Language:Python2 0
walterxie/MEP-tutorial
Time stamped data tuturial for BEAST 2
Language:TeX1 0
walterxie/PackageViewer
Summarise BEAST 2 packages
Language:JavaScript11 0
walterxie/PhyDyn
Migration to BEAST 2.7
Language:Java0 0
walterxie/SiteFrequencySpectrum
GT16 data type site frequency spectrum
Language:R1 0
walterxie/starbeast2
Migration to BEAST 2.7
Language:Java0 0