wangjk321

Computational genomics

The University of Tokyo

Pinned Repositories

snATAC_Hyndman
Single nucleus RNA and ATAC analyses associated with our study defining the role of kidney epithelial Hdac1 and Hdac2.
Language:R0 1 10
STARE
TF analysis from epigenetic and Hi-C data
Language:C++16 4 102
Churros-v0.13.2
A docker image for epigenome analysis
Language:Python00
CohesinDB_public
Code for CohesinDB
Language:HTML0 1 01
CustardPy-v1.9.1
A docker image for 3D genome analysis
Language:HTML00
H1D_documents
Documents for HiC1Dmetrics
Language:HTML00
HiC1Dmetrics
This repository contain code and basic tutorial for "HiC1Dmetrics"
Language:Python3 1 62
mango_multithreads_wang
modified ChIA-PET pipeline
Language:R0 1 01
rinkou2021
testReadthedocs
Language:JavaScript0 1 00
SCRIP
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
Language:Python4 1 41

wangjk321's Repositories

wangjk321/HiC1Dmetrics
This repository contain code and basic tutorial for "HiC1Dmetrics"
Language:Python3 1 62
wangjk321/Churros-v0.13.2
A docker image for epigenome analysis
Language:Python00
wangjk321/CohesinDB_public
Code for CohesinDB
Language:HTML0 1 01
wangjk321/CustardPy-v1.9.1
A docker image for 3D genome analysis
Language:HTML00
wangjk321/H1D_documents
Documents for HiC1Dmetrics
Language:HTML00
wangjk321/mango_multithreads_wang
modified ChIA-PET pipeline
Language:R0 1 01
wangjk321/rinkou2021
testReadthedocs
Language:JavaScript0 1 00