Pinned Repositories
3d-dna
3D de novo assembly (3D DNA) pipeline
alien_index
identify potential non-animal transcripts in animal transcriptomes
alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
BamDeal
BamDeal: a comprehensive toolkit for bam manipulation
ensembl-pipeline
Job management for the Ensembl Genebuild pipeline
Mash
Fast genome and metagenome distance estimation using MinHash
redmask
Genome assembly soft-masking using Red (REpeat Detector)
singleCellRNASeq
exploring unsupervised single cell transcriptome analysis
TEanalysis
Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
TEorthology
Script to help assessing the evolutionary history of a TE family
wangzhennan14's Repositories
wangzhennan14/TEanalysis
Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
wangzhennan14/TEorthology
Script to help assessing the evolutionary history of a TE family
wangzhennan14/alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
wangzhennan14/Anime4K
A High-Quality Real Time Upscaler for Anime Video
wangzhennan14/BGI-Hi-C-Computational-Analysis
Scripts to analyze BGI HiC data and produce contact maps
wangzhennan14/biocluster
Tutorial on building a computing cluster for bioinformatics
wangzhennan14/biocode
Bioinformatics code libraries and scripts
wangzhennan14/CAFE_fig
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
wangzhennan14/ccgutils
utilties in various languages used in one or more projects
wangzhennan14/HiCAssembler
Software to assemble contigs/scaffolds into chromosomes using Hi-C data
wangzhennan14/higlass
Fast large scale matrix visualization for the web.
wangzhennan14/instaGRAAL
Large genome reassembly based on Hi-C data, continuation of GRAAL
wangzhennan14/LDhat
Estimate recombination rates from population genetic data
wangzhennan14/LocalHERA
wangzhennan14/mHiC
wangzhennan14/Novo_Stitch
Novo&Stitch is a genome assembly reconciliation tool based on optical map.
wangzhennan14/Parsing-RepeatMasker-Outputs
Few scripts facilitating the extraction of info from Repeat Masker .out files
wangzhennan14/phyluce
software for UCE (and general) phylogenomics
wangzhennan14/pinfish
Tools to annotate genomes using long read transcriptomics data
wangzhennan14/raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
wangzhennan14/RAxML_Astral_trees
This project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.
wangzhennan14/samblaster
samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
wangzhennan14/share_ppt
🚗 我个人曾经做过的技术分享...
wangzhennan14/shasta
De novo assembly from Oxford Nanopore reads.
wangzhennan14/syntenyPlotByR
plot genome alignment synteny
wangzhennan14/TREEasy
A tool to infer species tree and phylogenetic network from multilocus data
wangzhennan14/uPlot
📈 A small, fast chart for time series, lines, areas, ohlc & bars
wangzhennan14/VCF2Dis
VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format
wangzhennan14/wgd
Python package and CLI for whole genome duplication analyses
wangzhennan14/WGDdetector