Pinned Repositories
3d-dna
3D de novo assembly (3D DNA) pipeline
alien_index
identify potential non-animal transcripts in animal transcriptomes
alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
BamDeal
BamDeal: a comprehensive toolkit for bam manipulation
ensembl-pipeline
Job management for the Ensembl Genebuild pipeline
Mash
Fast genome and metagenome distance estimation using MinHash
redmask
Genome assembly soft-masking using Red (REpeat Detector)
singleCellRNASeq
exploring unsupervised single cell transcriptome analysis
TEanalysis
Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
TEorthology
Script to help assessing the evolutionary history of a TE family
wangzhennan14's Repositories
wangzhennan14/redmask
Genome assembly soft-masking using Red (REpeat Detector)
wangzhennan14/alien_index
identify potential non-animal transcripts in animal transcriptomes
wangzhennan14/awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
wangzhennan14/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
wangzhennan14/bionano-tools
Custom tools to 'facilitate' BioNano Genomics data analysis
wangzhennan14/BMSIM
BioNano molecule data simulator
wangzhennan14/bpp
Bayesian analysis of genomic sequence data under the multispecies coalescent model
wangzhennan14/Chinese-Podcasts
中文播客：Tech, VC, Life, Movie, Design...
wangzhennan14/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
wangzhennan14/cmap-js
Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).
wangzhennan14/cvitjs
CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.
wangzhennan14/es_data_export
ES数据导出工具，ES data export tool，elasticsearch data export tool，elasticsearch数据导出到文件，elasticsearch数据导出到数据库，目前已支持全部的6.x的版本,后续跟进更低的版本。
wangzhennan14/funannotate
Eukaryotic Genome Annotation Pipeline
wangzhennan14/GenoDup-Pipeline
This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
wangzhennan14/Genome-data-of-Hanfu-apple
FASTA files of chromosomes and genes, gff files for gene models.
wangzhennan14/guns-lite
基于spring boot脚手架项目，spring data jpa+Spring Boot2+bootstrap/vuejs完整的后台管理系统
wangzhennan14/instantbox
Get a clean, ready-to-go Linux box in seconds.
wangzhennan14/L_vannamei_genome
wangzhennan14/LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
wangzhennan14/lrscaf
TGS scaffolding
wangzhennan14/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
wangzhennan14/matlock
Simple tools for working with Hi-C data
wangzhennan14/minia
Minia is a short-read assembler based on a de Bruijn graph
wangzhennan14/OMGS
OMGS is a fast and accurate genome scaffolding tool with one or multiple Bionano optical maps
wangzhennan14/RRSelection
RRSelection: A linkage disequilibrium method to detect selection region across population VCF
wangzhennan14/SNPhylo
A pipeline to generate a phylogenetic tree from huge SNP data
wangzhennan14/tabulator
Interactive Tables and Data Grids for JavaScript
wangzhennan14/taxonomy
Taxonomy database and related questions, e.g. closest taxon in a given set
wangzhennan14/test-your-sysadmin-skills
A collection of *nix Sysadmin Test Questions and Answers for Interview/Exam (2018 Edition). Test your knowledge in different fields with these Q/A.
wangzhennan14/UCEs
UCE scripts