warrenson
Research software engineer, bioinformatician, futurist, and advancer.
@powerPlant, @PlantandFoodResearch, @BrightmindsNZAuckland, New Zealand
Pinned Repositories
adventofcode
My far less than optimal solutions to adventofcode problems
bookdown-project
Template for stand-alone projects using R Bookdown and GitHub workflows
cpan2rpm
A utility to produce RPM packages from CPAN modules
datasciencecoursera
https://class.coursera.org/datascitoolbox-030
datasharing
The Leek group guide to data sharing
edamontology
EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
eFP2
Inspired by eFP Browser - http://www.bar.utoronto.ca/efp/development/
ensembl
The Ensembl Core Perl API and SQL schema
publish
Collection of various things I deem helpful for publishing
warrenson's Repositories
warrenson/adventofcode
My far less than optimal solutions to adventofcode problems
warrenson/bookdown-project
Template for stand-alone projects using R Bookdown and GitHub workflows
warrenson/cpan2rpm
A utility to produce RPM packages from CPAN modules
warrenson/datasciencecoursera
https://class.coursera.org/datascitoolbox-030
warrenson/datasharing
The Leek group guide to data sharing
warrenson/edamontology
EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
warrenson/eFP2
Inspired by eFP Browser - http://www.bar.utoronto.ca/efp/development/
warrenson/ensembl
The Ensembl Core Perl API and SQL schema
warrenson/Exploring-Neural-Data
Course Work on Exploring Neural Data
warrenson/publish
Collection of various things I deem helpful for publishing
warrenson/genome-comparator
Compare Custom and Ensembl Genomes
warrenson/igv-webapp
IGV Web App
warrenson/knitr-examples
a collection of knitr examples
warrenson/nerdcommenter
Vim plugin for intensely nerdy commenting powers
warrenson/nextflow
A DSL for data-driven computational pipelines
warrenson/nextflow-vim
Nextflow plugin for VIM
warrenson/nzrse_hackathon_2020
NZ RSE 2020 hackathon: using machine learning to investigate simulation data
warrenson/Open-iTerm-or-Terminal-Here...
Generates an Applescript app that you can put in your Finder toolbar which will open an iTerm or Terminal tab at the current directory.
warrenson/RLinuxModules
R package that makes linux environment modules available from R
warrenson/rustlings
:crab: Small exercises to get you used to reading and writing Rust code!
warrenson/sandpit
A demonstration repository
warrenson/SDLib
A Python library used to collect shilling detection methods and generate simulated attackers. (for academic use)
warrenson/singularity.lang
xml syntax file for formatting Singularity recipes in gedit - coopted for Apptainer + Vim
warrenson/smrnaseq
A small-RNA sequencing analysis pipeline
warrenson/utils
General Coding Utilities