Wasserman Lab

Vancouver, British Columbia, Canada

Pinned Repositories

BiasAway
Language:Python7 6 55
ExplaiNN
ExplaiNN: interpretable and transparent neural networks for genomics
Language:Jupyter Notebook43 5 46
JASPAR-inference-tool
Code and data used by the JASPAR profile inference tool
Language:Python7 9 01
JASPAR-UCSC-tracks
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
Language:Python13 8 85
MANTA2
MANTA version 2.0
Language:Python5 6 23
OpenFlexTyper
An FM-index based tool for the rapid search of variants/sequences within unmapped read sets.
Language:C++4 5 44
oPOSSUM3
oPOSSUM Version 3
Language:HTML6 5 01
TF-Binding-Transfer-Learning
IPython notebooks and scripts for performing the different transfer learning experiments
Language:Jupyter Notebook7 3 03
TFFM
TFFM framework
Language:Python12 6 25
Variant_catalogue_pipeline
Variant catalogue pipeline
Language:HTML25 4 19

Wasserman Lab's Repositories

wassermanlab/ExplaiNN
ExplaiNN: interpretable and transparent neural networks for genomics
Language:Jupyter Notebook43 5 46
wassermanlab/Variant_catalogue_pipeline
Variant catalogue pipeline
Language:HTML25 4 19
wassermanlab/JASPAR-UCSC-tracks
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
Language:Python13 8 85
wassermanlab/TFFM
TFFM framework
Language:Python12 6 25
wassermanlab/BiasAway
Language:Python7 6 55
wassermanlab/JASPAR-inference-tool
Code and data used by the JASPAR profile inference tool
Language:Python7 9 01
wassermanlab/TF-Binding-Transfer-Learning
IPython notebooks and scripts for performing the different transfer learning experiments
Language:Jupyter Notebook7 3 03
wassermanlab/OpenFlexTyper
An FM-index based tool for the rapid search of variants/sequences within unmapped read sets.
Language:C++4 5 44
wassermanlab/gene2wordclouds
3 6 21
wassermanlab/GeneBreaker
GeneBreaker - Enabling the creation of synthetic rare disease scenarios
Language:Shell3 4 170
wassermanlab/TF-Binding-Matrix
A sparse 3D matrix of 2,503,732 bound and open regions across 175 transcription factors and 70 cells/tissues
Language:Python3 4 02
wassermanlab/variome
Language:Python3 3 03
wassermanlab/ADS
Allele Dispersion Score : Quantifying the range of allele frequencies across populations, based on UMAP
Language:R2 3 00
wassermanlab/OnTarget
Language:Python2 5 01
wassermanlab/revup
Language:JavaScript2 3 0
wassermanlab/OpenFlexTyper_restore
OpenFlexTyper
Language:C++1 4 0
wassermanlab/pubmed_db
PubmedDB
Language:Python1 2 00
wassermanlab/DemoProject_InternalContrib
Demo project for the Wasserman lab organization
0 4 20
wassermanlab/GUD
Genomic Unification Database
Language:Python0 4 150
wassermanlab/knits
Language:Python0 4 00
wassermanlab/plp
Language:Jupyter Notebook0 4 01
wassermanlab/wassermanlab.github.io
Language:HTML0 3 01
wassermanlab/XEnrich
Language:Jupyter Notebook0 3 00
wassermanlab/CTCF
Language:Jupyter Notebook4 0
wassermanlab/Doxygen_Example
An example set up for Doxygen to auto generate Github Pages
Language:R4 0
wassermanlab/IBVL
Language:Jupyter Notebook5 0
wassermanlab/PopSVar
wassermanlab/PWM-to-filter-weights
Language:Python3 0
wassermanlab/scheduler
Language:Python2 0
wassermanlab/transformers
Language:Jupyter Notebook2 0