pip install nanoretrotect
nanoretrotect [-h] [-v] [-t THREADS] [-o OUTDIR] [-p PREFIX]
[--verbose]
[-f {eps,jpeg,jpg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff}]
[--title TITLE] [--hours HOURS]
[--summary files [files ...]] [--bam files [files ...]]
Get detection curve of nanopore experiment.
General options:
-h, --help show the help and exit
-v, --version Print version and exit.
-t, --threads THREADS
Set the allowed number of threads to be used by the script
-o, --outdir OUTDIR Specify directory in which output has to be created.
-p, --prefix PREFIX Specify an optional prefix to be used for the output files.
Options for customizing the plots created:
-f, --format {eps,jpeg,jpg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff}
Specify the output format of the plots.
--title TITLE Add a title to all plots, requires quoting if using spaces
--hours HOURS How many hours to plot in the graph
Input data sources, requires a bam and a summary file.:
--summary files [files ...]
Data is a summary file generated by albacore.
--bam files [files ...]
Data as a sorted bam file.