weinformatics

weinformatics's Stars

• rook/rook

  Storage Orchestration for Kubernetes

  Language:Go12.3k2775.4k2.7k

• alexellis/k3sup

  bootstrap K3s over SSH in < 60s 🚀

  Language:Go6.2k76243375

• harvester/harvester

  Open source hyperconverged infrastructure (HCI) software

  Language:Go3.8k934.8k316

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.7k46347521

• fxia22/pointnet.pytorch

  pytorch implementation for "PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation" https://arxiv.org/abs/1612.00593

  Language:Python2.1k2593626

• chanzuckerberg/cellxgene

  An interactive explorer for single-cell transcriptomics data

  Language:JavaScript622321.4k116

• jmzeng1314/tcga_example

  Language:HTML275243229

• IOBR/IOBR

  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

  Language:HTML19467054

• cruizba/ubuntu-dind

  A docker image based in ubuntu to run docker containers inside docker containers

  Language:Shell17541582

• wu-yc/scMetabolism

  Quantifying metabolism activity at the single-cell resolution

  Language:R11053243

• melbournebioinformatics/MelBioInf_docs

  Melbourne Bioinformatics documentation in markdown format

  Language:HTML99191879

• kuixu/alphafold

  Install alphafold on the local machine, get out of docker.

  Language:Python9851934

• liulab-dfci/RIMA_pipeline

  Language:R7011121

• krishagni/openspecimen

  OpenSpecimen is an open source biobanking/biorepository management software developed by Krishagni Solutions (India).

  Language:Java6443048

• Furman-Lab/Peptide_docking_with_AF2_and_RosettAfold

  Code and data used in https://doi.org/10.1101/2021.08.01.454656

  Language:Jupyter Notebook511214

• vmware-archive/bitfusion-with-kubernetes-integration

  Bitfusion with Kubernetes Integration Support

  Language:Go5191023

• BostonGene/Kassandra

  Bostongene cell deconvolution algorithm from RNAseq

  Language:Jupyter Notebook50297

• mathworks-ref-arch/container-images

  MathWorks container images on Docker Hub

  Language:Dockerfile3613510

• foreverdream2/dysfunction_interaction_test

  Language:R296111

• s1ntaxe770r/SSH-dockerfile

  run ssh within your docker container

  Language:Dockerfile291232

• bicciatolab/popsicleR

  popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.

  Language:R24547

• ETH-NEXUS/scAmpi_single_cell_RNA

  Code related to scRNA analysis using the scAmpi workflow

  Language:R24788

• andreaskapou/scMET

  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

  Language:R20241

• greggbjensen/helm-crushftp

  Helm chart and docker image for CrushFTP server.

  Language:Shell7247

• perwu/MIAS

  Codes for the manuscript: Prediction of biomarkers and therapeutic combinations for anti-PD-1 immunotherapy using the global gene network association

  6102

• andreaskapou/SeuratPipe

  Packaging common Seurat analysis tasks for reproducible research

  Language:R5241

• andreaskapou/scMET-analysis

  Repo containing analysis for scMET manuscript

  Language:HTML2201

• CompEpigen/scMethrix

  An R 📦 for fast and flexible scDNA methylation analysis

  Language:R1412

• DoaneAS/elementoEpigenomics

  Language:R1201

• weinformatics/IOBR

  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

  Language:R1100