weishuzhao

A501-3DAC-AlphaFold

Here is the repository for scripts that utilized to achieve the results and figures in the manuscript entitled "Proteome-wide 3D structure prediction provides new insights into the ancestral metabolism of ancient archaea and bacteria"

MT-SwBw

group-contribution

Calculation of standard Gibbs free energy of reaction as a function of temperature

psamm-model-collection

Collection of PSAMM metabolic models converted from publicly available models

weishuzhao/MT-SwBw

weishuzhao/A501-3DAC-AlphaFold

Here is the repository for scripts that utilized to achieve the results and figures in the manuscript entitled "Proteome-wide 3D structure prediction provides new insights into the ancestral metabolism of ancient archaea and bacteria"

weishuzhao/psamm-model-collection

Collection of PSAMM metabolic models converted from publicly available models

weishuzhao/group-contribution

Calculation of standard Gibbs free energy of reaction as a function of temperature