/Schmidt-et-al-2024

All R code needed to reproduce figures and supplements from DOI: 10.1186/s12864-024-10013-x

Primary LanguageR

scRNAseq human pancreatic islet data integrated from GSE151117, GSE114412, GSE143783, GSE167880, GSE84133, GSE101207, GSE114297, & https://descartes.brotmanbaty.org/bbi/human-gene-expression-during-development/

The Seurat object containing all endocrine cells and the Seurat object containing all beta cells are deposited at the Washington University Research Data (WURD) repository (https://data.library.wustl.edu/) in standard RDS format.

Seurat objects contain cells, counts, feautures, donor age, donor bmi, differentiation protocol, and cell type.

Code to change gene names, run quality control, integrate, and remake all figures is attached.