Pinned Repositories
augustus
AUGUSTUS v3.2.1 for installation on Mac OS X
BioAge
Biological Age Calculations Using Several Biomarker Algorithms
BOA
Bug-free pOA. Jokes appart: POA V2 code with minor (but important) fixes
CARNAC-LR
Cogent
Coding Genome Reconstruction using Iso-Seq data
Competition_notebook
数据竞赛笔记fork
DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
Gene2vec
Gene2Vec: Distributed Representation of Genes Based on Co-Expression
GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
wenmm's Repositories
wenmm/AD-neutrophil-scRNA-seq
wenmm/AdaGCL
[KDD'2023] "AdaGCL: Adaptive Graph Contrastive Learning for Recommendation"
wenmm/awesome-free-chatgpt
🆓免费的 ChatGPT 镜像网站列表，持续更新。List of free ChatGPT mirror sites, continuously updated.
wenmm/awesome-graph-self-supervised-learning
Code for TKDE paper "Self-supervised learning on graphs: Contrastive, generative, or predictive"
wenmm/CCP-GNN
wenmm/chatbot-ollama
Chatbot Ollama is an open source chat UI for Ollama.
wenmm/diagonalization
Fast exact diagonalization with Eigen and ARPACK
wenmm/easyFL
An experimental platform for federated learning.
wenmm/EMTscore
wenmm/GCNFrame
This is a python package for genomics study with a GCN framework.
wenmm/gpt4free
The official gpt4free repository | various collection of powerful language models
wenmm/GraphSAGE
Representation learning on large graphs using stochastic graph convolutions.
wenmm/HemaScope_Tutorial
The tutorial for HemaScope toolkit.
wenmm/Homophily-Enhanced-Self-supervision
Code for TNNLS paper "Homophily-Enhanced Self-supervision for Graph Structure Learning: Insights and Directions"
wenmm/ICoN
Integration using Co-attention across Biological Networks
wenmm/LINGER
wenmm/manuscript_scRNAseq_lncRNAs
Repository containing all the scripts necessary for generating the results in the manuscript
wenmm/MAPE-PPI
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
wenmm/micro-array-data-ids
https://elucidatainc.github.io/micro-array-data-ids/index.html
wenmm/pytorch_geometric
Graph Neural Network Library for PyTorch
wenmm/RFA-GNN
Code for TNNLS paper "Beyond Homophily and Homogeneity Assumption: Relation-based Frequency Adaptive Graph Neural Networks"
wenmm/RNABenchmark
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
wenmm/Schmidt-et-al-2024
All R code needed to reproduce figures and supplements from DOI: 10.1186/s12864-024-10013-x
wenmm/sd-webui-EasyPhoto
📷 EasyPhoto | Your Smart AI Photo Generator.
wenmm/SingleFile
Web Extension for saving a faithful copy of a complete web page in a single HTML file
wenmm/SMAI
Alignability testing and integration of single-cell data
wenmm/SSLRec
[WSDM'2024 Oral] "SSLRec: A Self-Supervised Learning Framework for Recommendation"
wenmm/StackNote
文献阅读笔记。A serveless blog system based on Vue3.0 + vue router, a very strange usage, which don't need build. -- Powered by Vue3.js
wenmm/TISSUE
TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty measures for gene expression predictions in single-cell spatial transcriptomics datasets and utilizing them in downstream analyses
wenmm/transformer-walkthrough
A walkthrough of transformer architecture code