Pinned Repositories
augustus
AUGUSTUS v3.2.1 for installation on Mac OS X
BioAge
Biological Age Calculations Using Several Biomarker Algorithms
BOA
Bug-free pOA. Jokes appart: POA V2 code with minor (but important) fixes
CARNAC-LR
Cogent
Coding Genome Reconstruction using Iso-Seq data
Competition_notebook
数据竞赛笔记fork
DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
Gene2vec
Gene2Vec: Distributed Representation of Genes Based on Co-Expression
GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
wenmm's Repositories
wenmm/emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
wenmm/ANS-GT
NeurIPS'22 Spotlight paper "Hierarchical Graph Transformer with Adaptive Node Sampling"
wenmm/Awesome-Graph-Aug-Atk-via-Edge-Perturbation
wenmm/Bingo
wenmm/CQSIGN
Affordable GNN using Topological Contraction
wenmm/deepmaps
Single-cell biological network inference using a heterogeneous graph transformer
wenmm/DGP-AMIO
wenmm/gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
wenmm/graphSAGE-pytorch
A PyTorch implementation of GraphSAGE. This package contains a PyTorch implementation of GraphSAGE.
wenmm/Jupyter
The repository contains script and notebook related to Statistics, Machine learning, Neural network, Deep learning, NLP, Numerical methods, and Automation.
wenmm/LightGCN-PyTorch
The PyTorch implementation of LightGCN
wenmm/lncRNA-disease-methods
wenmm/machine-learning-articles
🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.
wenmm/MAST
Tools and methods for analysis of single cell assay data in R
wenmm/negativeExampleSelection
Demonstration of bias in graph machine learning owing to negative example selection
wenmm/NIAPU
NIAPU: network-informed adaptive positive-unlabelled learning for disease genes identification
wenmm/Pre-basophil-paper
wenmm/proxy_pool
Python ProxyPool for web spider
wenmm/pulearn
Positive-unlabeled learning with Python.
wenmm/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
wenmm/recommenders
Best Practices on Recommendation Systems
wenmm/scanpy
Single-cell analysis in Python. Scales to >1M cells.
wenmm/scib
Benchmarking analysis of data integration tools
wenmm/scvi-tools
Deep probabilistic analysis of single-cell omics data
wenmm/Spectral-Graph-Survey
first commit
wenmm/speos
A positive-unlabeled ensemble learning framework for disease gene prioritization.
wenmm/stellargraph
StellarGraph - Machine Learning on Graphs
wenmm/SUPREME
SUPREME: A GCN based approach for cancer subtype prediction
wenmm/ValidationBias
wenmm/XGDAG