Pinned Repositories
augustus
AUGUSTUS v3.2.1 for installation on Mac OS X
BioAge
Biological Age Calculations Using Several Biomarker Algorithms
BOA
Bug-free pOA. Jokes appart: POA V2 code with minor (but important) fixes
CARNAC-LR
Cogent
Coding Genome Reconstruction using Iso-Seq data
Competition_notebook
数据竞赛笔记fork
DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
Gene2vec
Gene2Vec: Distributed Representation of Genes Based on Co-Expression
GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
wenmm's Repositories
wenmm/Competition_notebook
数据竞赛笔记fork
wenmm/emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
wenmm/Rat_AngII_IsoSeq_PacBio
Integrative analysis of Iso-Seq and RNA-seq reveals dynamic changes of alternative promoter, alternative splicing and alternative polyadenylation during Angiotensin II-induced senescence in rat primary aortic endothelial cells
wenmm/10X_singlecell
wenmm/arbitrary_pu
NeurIPS'20 Paper: "Learning from Positive and Unlabeled Data with Arbitrary Positive Shift"
wenmm/benchmarking-gnns
Repository for benchmarking graph neural networks
wenmm/biobert
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
wenmm/cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
wenmm/Cell_BLAST
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
wenmm/DeepEP
a deep learning framework for essential protein prediction
wenmm/dgMDL
A disease gene prediction algorithm based on multimodel deep belief net
wenmm/EMT_SCLC_project
wenmm/FED-PUB
Official Code Repository for the paper - Personalized Subgraph Federated Learning (ICML 2023)
wenmm/GETRAL
The source code of "Adversarial Contrastive Learning for Evidence-aware Fake News Detection with Graph Neural Networks
wenmm/GraphMAE
GraphMAE: Self-Supervised Masked Graph Autoencoders in KDD'22
wenmm/GRF
Graph Random Forest: A graph embedded algorithm for identifying highly connected important features
wenmm/ImageBind
ImageBind One Embedding Space to Bind Them All
wenmm/LION
An Integrated R Package for Effective Prediction of ncRNA- and lncRNA-protein Interaction
wenmm/LION_Supplementary
Supplementary Data for LION
wenmm/LncTargeter
wenmm/MatDeepLearn
MatDeepLearn, package for graph neural networks in materials chemistry
wenmm/Megatron-DeepSpeed
Ongoing research training transformer language models at scale, including: BERT & GPT-2
wenmm/MNGCL
Multi-graph contrastive learning for cancer driver gene identification
wenmm/multi-node2vec
This is Python source code for the multi-node2vec algorithm for fast embedding of multilayer networks
wenmm/Network_Evaluation_Tools
Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
wenmm/ohmyzsh
🙃 A delightful community-driven (with 2,100+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
wenmm/RPI_script
wenmm/SEAL_OGB
An open-source implementation of SEAL for link prediction in open graph benchmark (OGB) datasets.
wenmm/SNHE
This repo is for source code of paper "Self-supervised Nodes-Hyperedges Embedding for Heterogeneous Information Network Learning"
wenmm/ucdeconvolve_paper
UniCell Deconvolve Paper