wichne

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

AdventOfCode2015

My answers to the Advent of Code challenge (adventofcode.com)

biases_in_genome_reconstruction

Code supporting the manuscript Biases in Genome Reconstruction from Metagenomic Data

ENVscripts

Perl scripts that interact with the ENV relational database structure, loading, retrieving, etc

LatentStrainAnalysis

Partitioning and analysis methods for large, complex sequence datasets

LipidomicsMapTools

my-gen-prop

Alterations to JCVI's GenomeProperties scripts to enable analysis of data stored in flatfiles.

OrthologAnalysis

A flexible pipeline for deducing orthology relationships between proteins in genomic (proteomic) datasets.

PerlGenomicsTools

A collection of tools written in Perl, many requiring Bioperl, for handling and analyzing genomic and metagenomic sequence data.

Xander_files

HMMs and associated files for use with the Xander gene assembly system

wichne/OrthologAnalysis

A flexible pipeline for deducing orthology relationships between proteins in genomic (proteomic) datasets.

wichne/AdventOfCode2015

My answers to the Advent of Code challenge (adventofcode.com)

wichne/biases_in_genome_reconstruction

Code supporting the manuscript Biases in Genome Reconstruction from Metagenomic Data

wichne/ENVscripts

Perl scripts that interact with the ENV relational database structure, loading, retrieving, etc

wichne/LatentStrainAnalysis

Partitioning and analysis methods for large, complex sequence datasets

wichne/LipidomicsMapTools

wichne/my-gen-prop

Alterations to JCVI's GenomeProperties scripts to enable analysis of data stored in flatfiles.

wichne/PerlGenomicsTools

A collection of tools written in Perl, many requiring Bioperl, for handling and analyzing genomic and metagenomic sequence data.

wichne/Xander_files

HMMs and associated files for use with the Xander gene assembly system