Pinned Repositories
OrthologAnalysis
A flexible pipeline for deducing orthology relationships between proteins in genomic (proteomic) datasets.
AdventOfCode2015
My answers to the Advent of Code challenge (adventofcode.com)
biases_in_genome_reconstruction
Code supporting the manuscript Biases in Genome Reconstruction from Metagenomic Data
ENVscripts
Perl scripts that interact with the ENV relational database structure, loading, retrieving, etc
LatentStrainAnalysis
Partitioning and analysis methods for large, complex sequence datasets
LipidomicsMapTools
my-gen-prop
Alterations to JCVI's GenomeProperties scripts to enable analysis of data stored in flatfiles.
PerlGenomicsTools
A collection of tools written in Perl, many requiring Bioperl, for handling and analyzing genomic and metagenomic sequence data.
Xander_files
HMMs and associated files for use with the Xander gene assembly system
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
wichne's Repositories
wichne/ENVscripts
Perl scripts that interact with the ENV relational database structure, loading, retrieving, etc
wichne/OrthologAnalysis
A flexible pipeline for deducing orthology relationships between proteins in genomic (proteomic) datasets.
wichne/LipidomicsMapTools
wichne/biases_in_genome_reconstruction
Code supporting the manuscript Biases in Genome Reconstruction from Metagenomic Data
wichne/Xander_files
HMMs and associated files for use with the Xander gene assembly system
wichne/PerlGenomicsTools
A collection of tools written in Perl, many requiring Bioperl, for handling and analyzing genomic and metagenomic sequence data.
wichne/my-gen-prop
Alterations to JCVI's GenomeProperties scripts to enable analysis of data stored in flatfiles.
wichne/LatentStrainAnalysis
Partitioning and analysis methods for large, complex sequence datasets
wichne/AdventOfCode2015
My answers to the Advent of Code challenge (adventofcode.com)