Perl scripts that interact with the ENV relational database structure, loading, retrieving, etc
To load a genome:
-
First make a sequence_set entry $ for f in *.gtf; do g=${f/.gtf/}; echo "insert into sequence_sets (name, description, is_current) values ("$g", "Neisseria $g", 1)"; done | runsql -D Neisseria -P RenMan
-
Load the genome fasta file.