willpitchers
European evolutionary biologist, turned Bioinformatician at @BiomeB ...formerly @MDU-PHL , formerly at @msuefishlab , and @DworkinLab
BiomeBankThebarton, SA
Pinned Repositories
2015-12-15-reykjavik
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
badwolf
A Vim color scheme.
bb-lock
biodemo
Coreugate
A simple cgMLST pipeline
garrulous-turtle
workbook for assembly of the *Paramormyrops kingsleyae* genome
petulant-dubstep
Analysis scripts for Tack et al. 2014
Pitchers_PTRS2014
Code and Data for Pitchers et. al. 2014
willpitchers's Repositories
willpitchers/Coreugate
A simple cgMLST pipeline
willpitchers/bb-lock
willpitchers/biodemo
willpitchers/garrulous-turtle
workbook for assembly of the *Paramormyrops kingsleyae* genome
willpitchers/chart-doctor
Sample files to accompany the FT's Chart Doctor column
willpitchers/coreuscan
A tool for downloading Core Genome MLST schemes for bacterial genomics for use with chewBBACA
willpitchers/creepy-barnacle
willpitchers/datasharing
The Leek group guide to data sharing
willpitchers/dragonflye
:dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads
willpitchers/expert-doodle
willpitchers/genotyphi
Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
willpitchers/homebrew-core
🍻 Default formulae for the missing package manager for macOS
willpitchers/homebrew-science
:beer::microscope: Scientific formulae for the Homebrew package manager
willpitchers/my_scripts
repo for my scripts folder
willpitchers/pando
With a file of isolate IDs as input, compile all results (abricate, kraken, mlst) into a single table and infer an NJ tree using the alignment-free Andi phylogenomic software.
willpitchers/refactored-giggle
This is an R Markdown Notebook to document an analysis of the iris dataset that is packaged with the base installation of R.
willpitchers/saint-ex
Tool for finding & ID-ing stx alleles
willpitchers/shell-novice
Software Carpentry introduction to the shell for novices.
willpitchers/shigatyper
CFSAN Shigella Typing Pipeline
willpitchers/sistr_cmd
SISTR (Salmonella In Silico Typing Resource) command-line tool
willpitchers/slidify_test
willpitchers/srst2
Short Read Sequence Typing for Bacterial Pathogens
willpitchers/super-duper-spoon
GWAS with the DGRP Lines
willpitchers/TreeToReads
Pipeline to generate NGS reads from a phylogeny
willpitchers/ubiquitous-adventure
Data Incubator challenge plots
willpitchers/upgraded-disco
A short workshop in data manipulation using **R** , and principally the Tidyverse.
willpitchers/vimrc
The ultimate Vim configuration: vimrc
willpitchers/willpitchers.github.io
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
willpitchers/workflowr-demo
willpitchers/wtf
The personal information dashboard for your terminal.