wmacnair
Computational biologist at Roche, working on neuroscience. Formerly with @markrobinsonca at UZH in Zürich. Interested in all the single cell!
Pinned Repositories
alevinQC
Create QC and summary reports for Alevin output
robinsonlabuzh.github.io
Robinson Lab website
muscat
Multi-sample multi-group scRNA-seq analysis tools
popalign
psupertime
psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
psupplementary
Supplementary data and analyses for the package psupertime
SampleQC
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
SampleQC_paper_analyses
workflowR website for SampleQC paper analyses
TreeTop
TreeTop is an algorithm for single-cell data analysis to identify and assess statistical significance of branch points in biological processes with possibly multi-level branching hierarchies. We demonstrate branch point identification for processes with varying topologies, including T cell maturation, B cell differentiation and hematopoiesis. Our analyses are consistent with recent experimental studies suggesting a shallow hierarchy of differentiation events in hematopoiesis, rather than the classical multi-level hierarchy.
TreeTop_data
Example data for package TreeTop
wmacnair's Repositories
wmacnair/psupertime
psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
wmacnair/SampleQC
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
wmacnair/psupplementary
Supplementary data and analyses for the package psupertime
wmacnair/TreeTop
TreeTop is an algorithm for single-cell data analysis to identify and assess statistical significance of branch points in biological processes with possibly multi-level branching hierarchies. We demonstrate branch point identification for processes with varying topologies, including T cell maturation, B cell differentiation and hematopoiesis. Our analyses are consistent with recent experimental studies suggesting a shallow hierarchy of differentiation events in hematopoiesis, rather than the classical multi-level hierarchy.
wmacnair/muscat
Multi-sample multi-group scRNA-seq analysis tools
wmacnair/TreeTop_data
Example data for package TreeTop
wmacnair/popalign
wmacnair/SampleQC_paper_analyses
workflowR website for SampleQC paper analyses