wmacnair/psupertime
psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
RGPL-3.0
Issues
- 0
long vectors not supported
#31 opened by GangLiTarheel - 8
- 3
Error: processing vignette 'psuper_intro.Rmd' failed with diagnostics: all(colSums(avg_knn_mat) == 1) is not TRUE
#26 opened by larafeulner - 0
glmnet error
#30 opened by nfancy - 0
Where are psupertime values stored?
#29 opened by Pinolinoo - 0
fix change in as.matrix
#28 opened by wmacnair - 0
Vignettes :The requested page was not found
#27 opened by cynthier - 0
predict on new data
#25 opened by GangLiTarheel - 0
error after cross validation
#24 opened by nfancy - 0
deprecation warning
#22 opened by schmeing - 0
y_labels parameter does not work
#21 opened by schmeing - 2
Cell number bias
#19 opened by dylanmr - 2
Error: 'trendVar' is defunct, Use 'fitTrendVar' instead when identifying highly variable genes
#20 opened by qrzhang - 2
Is there any way to speed up for heavy datasets
#18 opened by qrzhang - 5
Error: processing vignette 'psuper_intro.Rmd' failed with diagnostics: E> argument "exclude" is missing, with no default
#17 opened by qrzhang - 1
Improvement suggestion for heatmap
#16 opened by doncarlos999 - 2
Scoring on gene associations with groups
#15 opened by cstill1992 - 2
Use glmnet with family='binomial' parameter
#8 opened by sbrn3 - 1
- 2
beta coefficients explanation
#13 opened by mahmoudibrahim - 3
- 4
Using 'hvg' option Error in .local(x, ...) : need at least 2 points for non-parametric curve fitting
#12 opened by aron0093 - 1
error with plot_double_psupertime
#10 opened by plger - 1
vignette not available
#9 opened by plger - 3
Error with labels
#5 opened by DanLesman - 1
Sanitizing labels
#7 opened by topherconley - 1
Single gene plotting gives NA for label
#6 opened by topherconley - 2
- 1
Error with matrix input: select_genes() expects genes in rows, psupertime() requires genes in columns
#2 opened by dpcook - 2