woolf-wu

woolf-wu's Stars

• asncd/MIMOSCA

  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.

  Language:Jupyter Notebook8125

• YMa-lab/CARD

  Language:R8520

• PaulingLiu/ROGUE

  Assessing the purity of single cell population

  Language:R9012

• statOmics/tradeSeq

  TRAjectory-based Differential Expression analysis for SEQuencing data

  Language:HTML23327

• JEFworks-Lab/STdeconvolve

  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

  Language:R9911

• MarioniLab/sagenet

  Spatial reconstruction of dissociated single-cell data

  Language:Jupyter Notebook172

• Winnie09/GPTCelltype

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• Teichlab/cellhint

  A tool for semi-automatic cell type harmonization and integration

  Language:Python817

• davidliwei/awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  477106

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python14520

• gxiaolab/scAllele

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• dmcable/spacexr

  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

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• liulab-dfci/RIMA_pipeline

  Language:R6721

• doraadong/TraSig

  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data

  Language:Jupyter Notebook242

• livnatje/DIALOGUE

  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.

  Language:R10114

• CyrilLagger/scDiffCom

  Difference in Intercellular Communication from scRNA-seq data

  Language:R201

• saezlab/mistyR

  Multiview Intercellular SpaTial modeling framework

  Language:R4011

• multitalk/awesome-cell-cell-communication

  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

  Language:Jupyter Notebook235

• saezlab/OmnipathR

  R client for the OmniPath web service

  Language:R9719

• zcang/COMMOT

  Language:Python7813

• theislab/ncem

  Learning cell communication from spatial graphs of cells

  Language:Python10013

• data2intelligence/CytoSig

  Language:Python3710

• obophenotype/cell-ontology

  An ontology of cell types

  Language:Makefile13749

• cellgeni/schard

  reticulate-free single cell format conversion

  Language:R553

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R35051

• josephmisiti/awesome-machine-learning

  A curated list of awesome Machine Learning frameworks, libraries and software.

  Language:Python64.6k14.5k

• saezlab/liana-py

  LIANA+: an all-in-one framework for cell-cell communication

  Language:Python14015

• earmingol/cell2cell

  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

  Language:Python5512

• BlishLab/scriabin

  Analysis of cell-cell communication at single-cell resolution

  Language:R9312

• yuifu/millefy

  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset

  Language:R272