Pinned Repositories
dockstore-workflow-rnaseq
dockstore-workflow-scrna
Process 10X Genomics ssRNA data to produce aggregated gene count table
aws-infra
Global Sage Bionetworks AWS Infrastructure
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
dockstore-tool-star
Dockerized container and CWL Tool for STAR
dockstore-tool-template
A template project for setting up a containerized CWL Tool.
dockstore-workflow-template
A template project for a CWL workflow
GeneForest
Gene Discovery using Random Forests in Python
nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
PBS-GEM
Workflow for creating a gene expression matrix (GEM) using resources available on the Palmetto Cluster at Clemson University
wpoehlm's Repositories
wpoehlm/PBS-GEM
Workflow for creating a gene expression matrix (GEM) using resources available on the Palmetto Cluster at Clemson University
wpoehlm/GeneForest
Gene Discovery using Random Forests in Python
wpoehlm/aws-infra
Global Sage Bionetworks AWS Infrastructure
wpoehlm/cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
wpoehlm/dockstore-tool-star
Dockerized container and CWL Tool for STAR
wpoehlm/dockstore-tool-template
A template project for setting up a containerized CWL Tool.
wpoehlm/dockstore-workflow-template
A template project for a CWL workflow
wpoehlm/nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
wpoehlm/nf-synindex
Nextflow pipeline for indexing S3 objects in Synapse
wpoehlm/sage-workflows-sandbox
In-progress and example CWL tools/workflows
wpoehlm/sandbox-infra
Automation for the Sage AWS org-sagebase-sandbox account
wpoehlm/sandbox-provisioner
An service to auto provision resources on AWS scicomp
wpoehlm/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
wpoehlm/scicomp-infra
wpoehlm/scicomp-provisioner
An service to auto provision resources
wpoehlm/synapseDocs
Synapse documentation pages
wpoehlm/SynapseWorkflowExample
This is an example of a workflow that works with the Synapse submission system.
wpoehlm/Table2DEG
Automates differential expression analysis with DESEQ2
wpoehlm/topmed-workflows
a place for topmed workflows
wpoehlm/tsne
A python wrapper for Barnes-Hut tsne
wpoehlm/UW-single-cell-hackathon
testing single cell analysis pipeline with UW collaborators