Wellcome Trust Sanger Institute - Human Genetics Informatics
Analysing genomic data at scale for the Human Genetics Program
Cambridge, UK
Pinned Repositories
docker-proxify
Allows building and running docker container images from behind a corporate proxy
gatk-cwl-generator
Generates CWL files from the GATK documentation
go-softpack-builder
Go implementation of a softpack builder service
hail_analysis_pipelines
Hail based analysis pipelines for HG projects
ibackup
Performant backups of many files to iRODS
nextflow-pipelines
Nextflow HGI pipelines
openconnect-proxy
Provide an authenticated http proxy that provides connectivity via an OpenConnect VPN client (to connect to a compatible AnyConnect VPN server)
softpack-core
SoftPack Core
softpack-web
Softpack Web provides a graphical user interface for Softpack services.
yascp
scRNA multimodal analysis pipeline utilised for large dataset processing
Wellcome Trust Sanger Institute - Human Genetics Informatics's Repositories
wtsi-hgi/hapi-ur
HAPI-UR: HAPlotype Inference for UnRelated samples (cloned from: https://code.google.com/p/hapi-ur)
wtsi-hgi/IYG
Inside Your Genome Project
wtsi-hgi/bloch
BLOCH project
wtsi-hgi/bcviz
JavaScript visualisation for bamcheck file format
wtsi-hgi/cvmfs
The CernVM File System
wtsi-hgi/cvmfs-test
A test framework for the CernVM-FS
wtsi-hgi/DNG_dev
HGI's current version of DenovoGear, not the official release. A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)
wtsi-hgi/ep_disable_lists
Etherpad Lite plugin to disable list/indentation controls.
wtsi-hgi/ep_doi
Etherpad Lite plugin to enable doi: identifiers (linking automatically to http://dx.doi.org/)
wtsi-hgi/ep_pubmed
Etherpad Lite plugin to enable pubmed: identifiers (linking automatically to http://ncbi.nlm.nih.gov/pubmed/)
wtsi-hgi/etherpad-lite
An Etherpad based on node.js - Our goal is to make collaborative editing the standard on the web
wtsi-hgi/graph
Graph package providing various implementations of graph data structures and graph processing algorithms.
wtsi-hgi/hgc-deploy
Tools for creating and running Mercury containers. (now deprecated in favour of hgc-tools)
wtsi-hgi/IYG-Import
Python Data Importer for IYG Web
wtsi-hgi/IYG-SOT-Web
SNP and Trait description crowdsourcing site for the Inside Your Genome project.
wtsi-hgi/IYG-SOT-Web-Lib
Inside Your Genome Trait and SNP description Crowdsourcing Site Perl Modules
wtsi-hgi/IYG-Web
"Inside Your Genome" Web App
wtsi-hgi/IYG-Web-Lib
Perl Library for IYG Web
wtsi-hgi/mod-proxy-add-user
a tiny apache module to pass REMOTE_USER via headers to proxy servers
wtsi-hgi/r-travis
Tools for using R with Travis (http://travis-ci.org)
wtsi-hgi/rendr
Render your Backbone.js apps on the client and the server, using Node.js.
wtsi-hgi/replace_reads
Replaces reads in a BAM file
wtsi-hgi/translate_header
wtsi-hgi/wings
WINGS Workflow System