Wu Aiping Lab
Suzhou Institute of Systems Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College
China
Pinned Repositories
CovRecomb
A method to detect the inter-lineage recombinant of SARS-CoV-2
covSampler
A subsampling method for large-scale SARS-CoV-2 genome data sets
ImmuCC
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
RECDS
RECDS identifies cluster-transition determining sites underlying the antigenic evolution of seasonal influenza viruses
SARS-CoV-2_co-infection
A computational method to identify the compositional lineage(s) in SARS-CoV-2 infected samples
sarscov2-omicron-nyc
Early Introduction and Community Transmission of SARS-CoV-2 Omicron Variant, New York, New York, USA
scImmuCC
Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
sitePath
Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
sitePath_assessment
Test sitePath
virome_pipeline
A general pipeline constructed for viral metagenomes analysis from NGS read data.
Wu Aiping Lab's Repositories
wuaipinglab/ImmuCC
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
wuaipinglab/virome_pipeline
A general pipeline constructed for viral metagenomes analysis from NGS read data.
wuaipinglab/sitePath
Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
wuaipinglab/scImmuCC
Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
wuaipinglab/RECDS
RECDS identifies cluster-transition determining sites underlying the antigenic evolution of seasonal influenza viruses
wuaipinglab/covSampler
A subsampling method for large-scale SARS-CoV-2 genome data sets
wuaipinglab/CovRecomb
A method to detect the inter-lineage recombinant of SARS-CoV-2
wuaipinglab/SARS-CoV-2_co-infection
A computational method to identify the compositional lineage(s) in SARS-CoV-2 infected samples
wuaipinglab/bioconda-recipes
Conda recipes for the bioconda channel.
wuaipinglab/CovRecomb_Simulation_Test
The simulation test for the CovRecomb method using SARS-CoV-2 datasets.
wuaipinglab/genome_treatment
Some tools to treat aligned genome sequence.
wuaipinglab/SARS-CoV-2_early_outbreak
SARS-CoV-2 early outbreak analysis. Two polymorphism sites 8517 and 27641 (CDS numbering) were found to genotype the early strains.
wuaipinglab/SARS-CoV-2_one_year
Source code for the commentary paper
wuaipinglab/SARS-CoV-2_paraFix
SARS-CoV-2 paraFix mutations
wuaipinglab/SARS-CoV-2_webhub
Website for SARS-CoV-2 genome evolution research
wuaipinglab/sarscov2-omicron-nyc
Early Introduction and Community Transmission of SARS-CoV-2 Omicron Variant, New York, New York, USA
wuaipinglab/sitePath_assessment
Test sitePath
wuaipinglab/CoroAnnoter
A semi-automatic coronavirus genome annotation tool
wuaipinglab/estimate-bottleneck-size
wuaipinglab/sitePath_exec
Command line executable for sitePath
wuaipinglab/sra2variant
The pipeline to replace our CLC workbench