/sitePath_assessment

Test sitePath

Primary LanguageR

Test robustness of sitePath

Download code and denpendency

This project uses Bioconda to manage package dependency.

conda env update
conda activate sitePath_assessment

Prepare test data

To collect antigenic shift mutations of influenza A H3N2 from Smith et al. 2004 paper and build tree.

python 1_get_sequence.py
python 2_build_tree.py

Run test

Test sitePath using the antigenic shift mutations.

Rscript 3_sitePath_test.R