Pinned Repositories
centrifuge
Classifier for metagenomic sequences
chat-gpt-google-extension
A browser extension to display ChatGPT response alongside Google Search results
ConQuR
Batch effects removal for microbiome data via conditional quantile regression
Emergent-phases
fastspar
Rapid and scalable correlation estimation for compositional data
Heritability
Heritability in plant breeding - R and SAS code examples
inStrain
Bioinformatics program inStrain
MALDIquant
Quantitative Analysis of Mass Spectrometry Data
NetMoss
NetMoss2
xiaolw95's Repositories
xiaolw95/NetMoss
xiaolw95/NetMoss2
xiaolw95/chat-gpt-google-extension
A browser extension to display ChatGPT response alongside Google Search results
xiaolw95/centrifuge
Classifier for metagenomic sequences
xiaolw95/ConQuR
Batch effects removal for microbiome data via conditional quantile regression
xiaolw95/Emergent-phases
xiaolw95/fastspar
Rapid and scalable correlation estimation for compositional data
xiaolw95/Heritability
Heritability in plant breeding - R and SAS code examples
xiaolw95/inStrain
Bioinformatics program inStrain
xiaolw95/MALDIquant
Quantitative Analysis of Mass Spectrometry Data
xiaolw95/maliampi
Maximum Likelihood Amplicon Pipeline
xiaolw95/MashMap
A fast approximate aligner for long DNA sequences
xiaolw95/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
xiaolw95/micom
Python package to study microbial communities using metabolic modeling.
xiaolw95/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
xiaolw95/mOTUs
motus - a tool for marker gene-based OTU (mOTU) profiling
xiaolw95/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
xiaolw95/NetCoMi
Network construction, analysis, and comparison for microbial compositional data
xiaolw95/siamcat
R package for Statistical Inference of Associations between Microbial Communities And host phenoType
xiaolw95/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
xiaolw95/sparcc-2
xiaolw95/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
xiaolw95/VIBRANT
Virus Identification By iteRative ANnoTation
xiaolw95/VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
xiaolw95/woltka
Woltka: a versatile meta'omic data classifier