xiaoyu12

xiaoyu12's Stars

• Teddy-XiongGZ/MedRAG

  Code for the MedRAG toolkit

  Language:Python16025

• OpenBMB/ToolBench

  [ICLR'24 spotlight] An open platform for training, serving, and evaluating large language model for tool learning.

  Language:Python4.7k401

• rsinghlab/scGrapHiC

  A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

  Language:Python5

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow863691

• BIMSBbioinfo/pigx

  Pipelines in genomics

  Language:HTML215

• pditommaso/awesome-pipeline

  A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

  6.1k625

• wukevin/proteinclip

  Contrastive learning harmonizing protein language models and natural language models

  Language:Python173

• Stability-AI/generative-models

  Generative Models by Stability AI

  Language:Python24k2.7k

• lightvector/KataGo

  GTP engine and self-play learning in Go

  Language:C++3.5k561

• fsahli/Delta-PINNs

  Language:Jupyter Notebook184

• rtqichen/torchdiffeq

  Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

  Language:Python5.5k908

• 2noise/ChatTTS

  A generative speech model for daily dialogue.

  Language:Python30.6k3.3k

• DreamFold/FoldFlow

  FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation

  Language:Jupyter Notebook1567

• atong01/conditional-flow-matching

  TorchCFM: a Conditional Flow Matching library

  Language:Python1.1k80

• facebookresearch/riemannian-fm

  code for "Riemannian Flow Matching on General Geometries".

  Language:Python1668

• ACEsuit/mace

  MACE - Fast and accurate machine learning interatomic potentials with higher order equivariant message passing.

  Language:Python480180

• AlexDuvalinho/geometric-gnns

  List of Geometric GNNs for 3D atomic systems

  917

• nnaisense/bayesian-flow-networks

  This is the official code release for Bayesian Flow Networks.

  Language:Python23426

• jasonyzhang/RayDiffusion

  Code for "Cameras as Rays"

  Language:Python48623

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook14.5k1.3k

• BostonGene/Procrustes

  Language:Jupyter Notebook2

• JinmiaoChenLab/Batch-effect-removal-benchmarking

  A benchmark of batch-effect correction methods for single-cell RNA sequencing data

  Language:Jupyter Notebook7044

• zhangyuqing/ComBat-seq

  Batch effect adjustment based on negative binomial regression for RNA sequencing count data

  Language:R15739

• rsinghlab/SCOT

  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

  Language:Jupyter Notebook6516

• hehefan/Continuous-Discrete-Convolution

  Language:Python394

• DeepGraphLearning/ESM-GearNet

  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)

  Language:Python7010

• YoshitakaMo/localcolabfold

  ColabFold on your local PC

  Language:Python554129

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook1.9k474

• RosettaCommons/RoseTTAFold

  This package contains deep learning models and related scripts for RoseTTAFold

  Language:Python2k436

• ProteinDesignLab/protpardelle

  Diffusion-based all-atom protein generative model.

  Language:Python15011