Pinned Repositories
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
ckanext-dcat
CKAN ♥ DCAT
d3
A JavaScript visualization library for HTML and SVG.
design
EPOS-DCAT-AP
DCAT-AP extension for EPOS Solid Earth Data
EPOS_DCAT-AP
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
ximenesuk's Repositories
ximenesuk/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
ximenesuk/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
ximenesuk/ckanext-dcat
CKAN ♥ DCAT
ximenesuk/design
ximenesuk/EPOS-DCAT-AP
DCAT-AP extension for EPOS Solid Earth Data
ximenesuk/EPOS_DCAT-AP
ximenesuk/etlhelper
ETL Helper is a Python library to simplify data transfer between databases.
ximenesuk/mapper
OpenOrienteering Mapper is a software for creating maps for the orienteering sport.
ximenesuk/Mathics
a general-purpose computer algebra system
ximenesuk/mtools
Image analysis tools in Matlab working with data in an OMERO server
ximenesuk/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
ximenesuk/nanopype
Snakemake pipelines for nanopore sequencing data archiving and processing
ximenesuk/ome-documentation
Sphinx-based documentation for the Open Microscopy Environment
ximenesuk/omero-install
OMERO installation scripts
ximenesuk/ou-tm351
WIP site - issue tracker
ximenesuk/presentations
HTML-based presentations from the OME team.
ximenesuk/pygeoapi
pygeoapi is a Python server implementation of the OGC API suite of standards. The project emerged as part of the next generation OGC API efforts in 2018 and provides the capability for organizations to deploy a RESTful OGC API endpoint using OpenAPI, GeoJSON, and HTML. pygeoapi is open source and released under an MIT license.
ximenesuk/pytest-rerunfailures
a py.test plugin that re-runs failed tests up to -n times to eliminate flakey failures
ximenesuk/RBioFormats
R interface to the Bio-Formats library
ximenesuk/scripts
Extracted OmeroPy/scripts directory for local modifications.
ximenesuk/shacl
SHACL API in Java based on Apache Jena
ximenesuk/Shapely
Manipulation and analysis of geometric objects
ximenesuk/shell-tools
Useful shell scripts and other tools for sysadmin, docker, etc
ximenesuk/snoopycrimecop
OME tools for managing the git(hub) workflow
ximenesuk/snoopys-sandbox
Test repository for the snoopycrimecop/snoopycrimecop code.
ximenesuk/snoopys-sandbox-2
Submodule for snoopy-sandbox for properly testing scc.py
ximenesuk/sony_camera_api
sony camera remote api
ximenesuk/test-repo
A test repository
ximenesuk/WordPress
WordPress, Git-ified. Synced via SVN every 15 minutes, including branches and tags! This repository is just a mirror of the WordPress subversion repository. Please do not send pull requests. Submit patches to http://core.trac.wordpress.org/ instead.
ximenesuk/ximenesuk.github.io