xiongxu

Pinned Repositories

adv-r
Advanced R programming: a book
Language:TeX0 2 00
bam2bedGraph2
Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
Language:C12 2 00
bamDraw
bam file visualization scheme
Language:C6 3 02
bamRadixSort
bam sort with radix algorithm
Language:C1 2 10
hg19UCSC_canonical
hg19UCSC_canonical transcript/refSeq/symbol And the exons/CDS it contains
2 2 00
HighPerformanceNGS
hight performance & useful tools for working with fastq and bam files
Language:C30 3 06
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
Language:Python1 2 00
redisAligner
NGS 36-mer perfect match sequecing aligner based on redis
Language:C2 2 01
RNAseqVis
RNAseq Visualization tools written by Perl
Language:Perl1 2 00
vcf2vaf
calculate variant allele frequency from vcf file
1 2 00

xiongxu's Repositories

xiongxu/HighPerformanceNGS
hight performance & useful tools for working with fastq and bam files
Language:C30 3 06
xiongxu/bam2bedGraph2
Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
Language:C12 2 00
xiongxu/bamDraw
bam file visualization scheme
Language:C6 3 02
xiongxu/hg19UCSC_canonical
hg19UCSC_canonical transcript/refSeq/symbol And the exons/CDS it contains
2 2 00
xiongxu/redisAligner
NGS 36-mer perfect match sequecing aligner based on redis
Language:C2 2 01
xiongxu/bamRadixSort
bam sort with radix algorithm
Language:C1 2 10
xiongxu/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
Language:Python1 2 00
xiongxu/RNAseqVis
RNAseq Visualization tools written by Perl
Language:Perl1 2 00
xiongxu/vcf2vaf
calculate variant allele frequency from vcf file
1 2 00
xiongxu/biotools
A list of useful bioinformatics resources
2 01
xiongxu/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
Language:C2 0
xiongxu/d3-3.x-api-reference
An archive of the D3 3.x API Reference.
2 0
xiongxu/d3-shape
Graphical primitives for visualization, such as lines and areas.
Language:JavaScript2 0
xiongxu/dep
Draw depth plot of bam
xiongxu/DGTable.js
A Backbone+jQuery high-performance table for web-apps
Language:JavaScript2 0
xiongxu/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX2 0
xiongxu/libBigWig
A C library for handling bigWig files
Language:C2 0
xiongxu/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Language:Nim2 0
xiongxu/networkD3
D3 JavaScript Network Graphs from R
Language:R2 0
xiongxu/opendht
A C++11 Distributed Hash Table implementation
Language:C++2 0
xiongxu/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C1 0
xiongxu/sdsl-lite
Succinct Data Structure Library 3.0 (unstable, prerelease)
Language:C++1 0
xiongxu/SeqMule
Automated human exome/genome variants detection from FASTQ files
Language:C++2 0
xiongxu/single_file_libs
List of single-file C/C++ libraries.
2 0
xiongxu/starter-nodejs-rest
Starter for a Node.js REST Application using MongoDB and JSON Web Token
Language:JavaScript2 0
xiongxu/tadtool
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
Language:Python2 0
xiongxu/tracy
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Language:C++1 0
xiongxu/windows_batch_dsrc
Automatically fastq(.gz) (de)compression on windows
Language:Makefile2 0
xiongxu/windowsNGSapp
pre-compiled windows NGS app
Language:Perl2 01
xiongxu/xiongxu.github.io
Panda's blog
Language:JavaScript2 01