xiongxu

xiongxu's Stars

• rougier/scientific-visualization-book

  An open access book on scientific visualization using python and matplotlib

  Language:Python10.8k19043995

• jqnatividad/qsv

  Blazing-fast Data-Wrangling toolkit

  Language:Rust2.5k1751772

• konrad-gajdus/miniMNIST-c

  Language:C1.2k263120

• KlugerLab/FIt-SNE

  Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

  Language:C++5943675107

• hms-dbmi/CHIEF

  Clinical Histopathology Imaging Evaluation Foundation Model

  Language:Python51793376

• marcelauliano/MitoHiFi

  Find, circularise and annotate mitogenome from PacBio assemblies

  Language:Python17158230

• ShujiaHuang/ilus

  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

  Language:Python13051135

• AndersenLab/VCF-kit

  VCF-kit: Assorted utilities for the variant call format

  Language:Python126184725

• frjnn/bhtsne

  Parallel Barnes-Hut t-SNE implementation written in Rust.

  Language:Rust72368

• brentp/vcfexpress

  expressions on VCFs

  Language:Rust65201

• vembrane/vembrane

  vembrane filters VCF records using python expressions

  Language:Python577195

• brwnj/fastq-multx

  Demultiplexes a fastq.

  Language:C++443178

• PMBio/deeprvat

  Language:Python3514336

• biosails/pheniqs

  Fast and accurate sequence demultiplexing

  Language:C++272294

• ShujiaHuang/basevar

  This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data

  Language:C26457

• maxdoblas/QuickEd

  QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.

  Language:C++23402

• lpipes/tronko

  A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets

  Language:C22320

• 4pygmalion/ASC3

  3ASC: variant prioritization tool leveraging multiple instance learning for rare Mendelian disease genomic testing

  Language:Jupyter Notebook7120

• huboqiang/split_index

  Demultiplexes a fastq.

  Language:C++6203

• raphael-group/lazac-copy-number

  fast and accurate phylogenetic reconstruction from copy number data

  Language:C++6330

• friendsofstrandseq/mosaicatcher

  Processing of raw Strand-seq data as part of the SV calling pipeline

  Language:C++45

• SUwonglab/carrier-stat

  Carrier statistic is a statistical framework to prioritize disease-related rare variants by integrating gene expression data

  Language:R300

• AndersenLab/sv-nf

  A nextflow pipeline to call structural variants using short or long read data

  Language:Nextflow263

• compgen-io/mappability

  Language:Python2100

• mills-lab/Scoval

  Command line and supplements for the project

  Language:Python2000

• AndersenLab/low_coverage_concordance

  Code to analyze concordance of a sequenced strain to an isotype reference strain

  Language:Shell130

• ArunMaurya8/exonCNV

  Infer exon level CNV from visium spatial data

  Language:Jupyter Notebook11

• gear-genomics/wallyapp

  Frontend web application for wally to visualize aligned sequencing reads

  Language:HTML130

• Jinglan1/NIPS2

  Language:Python110

• Xiaohuaniu0032/GeExCNV

  analysis germline CNV (exon-level and gene-level) from capture data

  Language:Perl10