Pinned Repositories
bedtools2
A powerful toolset for genome arithmetic.
deepTools
Tools to process and analyze deep sequencing data.
intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
MAVR
various bioinformatic instruments
Pantera
Protein-coding gene prediction tool
pikpak
pikpak web https://xubeisi.github.io/pikpak
protiler
ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design
RSSHub
🍰 Everything is RSSible
tabtk
Toolkit for processing TAB-delimited format
xubeisi.github.io
Beisi Xu
xubeisi's Repositories
xubeisi/pikpak
pikpak web https://xubeisi.github.io/pikpak
xubeisi/RSSHub
🍰 Everything is RSSible
xubeisi/translatesubs
It's a tool to translate subtitles into any language, that is supported by google translator :)
xubeisi/deepTools
Tools to process and analyze deep sequencing data.
xubeisi/intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
xubeisi/protiler
ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design
xubeisi/xubeisi.github.io
Beisi Xu
xubeisi/AriaNg
AriaNg, support aria2c command-line-like
xubeisi/Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
xubeisi/bsseq
Devel repository for bsseq
xubeisi/cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
xubeisi/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
xubeisi/easy_af2
Easy to AF2
xubeisi/egui
xubeisi/ggalluvial
Shiny only for https://github.com/corybrunson/ggalluvial
xubeisi/how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
xubeisi/igv.js
Lightweight html5 version of the Integrative Genomics Viewer
xubeisi/InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
xubeisi/lago
Open Source Metering and Usage Based Billing
xubeisi/lamarck
xubeisi/mind2mm
Simple tool, that convert mindmester.com files to FreeMind format
xubeisi/panel
Panel: The powerful data exploration & web app framework for Python
xubeisi/pantherapi-pyclient
Example code for calling Panther API services
xubeisi/racoon_clip
racoon_clip processes your iCLIP and eCLIP data from raw files to single-nucleotide crosslinks in a single step.
xubeisi/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
xubeisi/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
xubeisi/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
xubeisi/slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
xubeisi/streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
xubeisi/StripeCaller
A toolkit for analyzing architectural stripes