Pinned Repositories
bamQC
Workflow to run bam-qc-metrics (https://github.com/oicr-gsi/bam-qc-metrics)
bwaMem
Workflow for BWA mem
delly
Delly workflow produces a set of vcf files with different types of structural variant calls
guanyin
Reporting repository and report record keeping
haplotypeCaller
Haplotype caller WDL workflow for GATK4
hlaminer
wrapper workflow for BCGSC tool HLAminer
mutect2
Workflow to run Mutect2 (GATK4)
variantEffectPredictor
Variant Effect Predictor Workflow
bwaMem2
workflow for bwa-mem2
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
xuemeiluo's Repositories
xuemeiluo/bwaMem2
workflow for bwa-mem2
xuemeiluo/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.